| MirGeneDB ID | Spu-Mir-2011 |
|---|
| Family name |
MIR-2011 (all species) |
|---|
| Seed |
CAAGGUG |
|---|
| Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
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| MiRBase ID |
spu-mir-2011
|
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| Paralogues |
|
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| Orthologues |
Pfl-Mir-2011
Pmi-Mir-2011
Sko-Mir-2011
|
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| Node of Origin (locus) |
Ambulacraria
|
|---|
| Node of Origin (family) |
Ambulacraria
|
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Genome context
(Spur_5.0) |
AAGJ06000016.1: 28635498-28635558 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AAGACGAUCGCACCGUGCCUAGUCUCCCUGCAGUCACUACCACACCUUCGGUGGCUUUUUAUAGCUUCACCAAGGUGUGCUAGUGAUGACAGGGGGAUGGGAACAAUCAGCUGCAGACUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAGACGAUCGCACCGUG---| G CA C C GCUUUU
CCUA UCUCCCUG GUCACUA CACACCUU GGUG U
GGGU AGGGGGAC UAGUGAU GUGUGGAA CCAC A
GGUCAGACGUCGACUAACAA^ - AG C - UUCGAU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Spu-Mir-2011_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAGUCACUACCACACCUUCGGUG -23
Get sequence
|
|---|
| Mature sequence |
Spu-Mir-2011_3p |
| mirBase accession | MIMAT0009752 |
|---|
| Sequence |
39- CCAAGGUGUGCUAGUGAUGACA -61
Get sequence
|
|---|
