MirGeneDB 2.1

MirGeneDB ID

Spu-Mir-2008

Family name MIR-2008 (all species)
Seed UAUUAAC
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID spu-mir-2008
Paralogues
Orthologues Pfl-Mir-2008  Pmi-Mir-2008  Sko-Mir-2008-v1  Sko-Mir-2008-v2 
Node of Origin (locus) Ambulacraria
Node of Origin (family) Ambulacraria
Genome context
(Spur_5.0)
AAGJ06000010.1: 6802287-6802345 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CGAGGUAGCAUAUUCUCCACUUUUUACCCCGUAUUAACAAUGUGGCUGAUGAGGAAUCUUAUGAACCAUCAGCCUCGCUGUCAAUACGAGGUAAGGAGUGACAACCAACCAAUCAACGA
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Structure
        10          20        30        40        50         
CGAGGUAGCAUAUUCUC--|          C      A   A  U        AGGAAUC 
                   CACUUUUUACC CGUAUU ACA UG GGCUGAUG       \
                   GUGAGGAAUGG GCAUAA UGU GC CCGACUAC       U
AGCAACUAACCAACCAACA^          A      C   C  U        CAAGUAU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
32 Bl Eg Ga Ov Pl To To
Mature sequence

Spu-Mir-2008_5p

mirBase accessionNone
Sequence
0- GUAUUAACAAUGUGGCUGAUGA -22
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Star sequence

Spu-Mir-2008_3p*

mirBase accessionMIMAT0009749
Sequence
37- AUCAGCCUCGCUGUCAAUACGA -59
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