MirGeneDB 2.1
MirGeneDB ID

Sko-Mir-71

Family name MIR-71 (all species)
Seed GAAAGAC
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-71
Paralogues
Orthologues Aae-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cgi-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Esc-Mir-71  Hme-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Npo-Mir-71  Obi-Mir-71  Ovu-Mir-71  Pfl-Mir-71  Pmi-Mir-71  Sme-Mir-71-P16a  Sme-Mir-71-P16b  Sme-Mir-71-P17  Sme-Mir-71-P18  Sme-Mir-71-P19  Spu-Mir-71  Tca-Mir-71 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Skow_1.1)		 NW_003142845.1: 55183-55242 [-]
Clustered miRNAs
(< 50kb from Mir-71)		 Mir-4830-P4 NW_003142845.1: 32678-32738 [-]
Mir-71 NW_003142845.1: 55183-55242 [-]
Precursor
(pre-Mir +30nt flank)
AGAAGGAUUGCAUUACUGGUGGGUGUUUUGUGAAAGACACAGGUAGUGAGAUAGUGUAUGGUAAACAUCUCGCUACUUUGGUCUCUCUCCAUAGCACCUUGCCAAAAUCUUCACAGCGGU
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Structure
        10        20         30         40        50         
AGAAGGAUUGCAUUACUGGU-       U  U-| A    AC            AGUGUA 
                     GGGUGUU UG  GA AGAC  AGGUAGUGAGAU      U
                     UCCACGA AC  CU UCUG  UUCAUCGCUCUA      G
UGGCGACACUUCUAAAACCGU       U  CU^ C    GU            CAAAUG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Mature sequence

Sko-Mir-71_5p
mirBase accessionMIMAT0009617
Sequence 
0- UGAAAGACACAGGUAGUGAGAU -22
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Star sequence

Sko-Mir-71_3p* (predicted)
mirBase accessionNone
Sequence 
38- CUCGCUACUUUGGUCUCUCUCC -60
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