MirGeneDB 2.1

MirGeneDB ID

Sko-Mir-4830-P3

Family name MIR-4830 (all species)
Seed CUCUUGA
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4830a
Paralogues Sko-Mir-4830-P1  Sko-Mir-4830-P2  Sko-Mir-4830-P4 
Orthologues
Node of Origin (locus) S. kowalevskii
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)
NW_003129909.1: 4632-4691 [-]
Clustered miRNAs
(< 50kb from Mir-4830-P3)
Mir-4830-P3 NW_003129909.1: 4632-4691 [-]
Mir-4830-P2 NW_003129909.1: 5103-5163 [-]
Mir-4830-P1 NW_003129909.1: 5451-5514 [-]
Precursor
(pre-Mir +30nt flank)
UUGAGAAGAUUUCACUAGGACCUGGUCUGUUCUCUUGAGAGCCAUAUAGAGGGAUGAGUUAAGAAGCCUGCUAUAUGCUCUCGGGAUUCCAGAACACGUCACUACACAAUACCAAGUGGU
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Structure
        10          20        30        40        50          
UUGAGAAGAUUUCACUAG--|  C  G    UUC          C      A   AUGAGU 
                    GAC UG UCUG   UCUUGAGAGC AUAUAG GGG      \
                    CUG AC AGAC   AGGGCUCUCG UAUAUC UCC      U
UGGUGAACCAUAACACAUCA^  C  A    CUU          -      G   GAAGAA 
.       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Mature sequence

Sko-Mir-4830-P3_5p

mirBase accessionMIMAT0020041
Sequence
0- UCUCUUGAGAGCCAUAUAGAGGG -23
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Star sequence

Sko-Mir-4830-P3_3p* (predicted)

mirBase accessionNone
Sequence
38- UGCUAUAUGCUCUCGGGAUUCC -60
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