MirGeneDB 2.1

MirGeneDB ID

Sko-Mir-4829-P3

Family name MIR-4829 (all species)
Seed GUACUUU
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4829c
Paralogues Sko-Mir-4829-P1  Sko-Mir-4829-P2 
Orthologues Pfl-Mir-4829-P3 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)
NW_003105101.1: 415480-415541 [-]
Clustered miRNAs
(< 50kb from Mir-4829-P3)
Mir-4829-P3 NW_003105101.1: 415480-415541 [-]
Mir-4829-P2 NW_003105101.1: 415704-415768 [-]
Mir-4829-P1 NW_003105101.1: 415937-415996 [-]
Precursor
(pre-Mir +30nt flank)
AUCAAUUGCUGGUGGCCUAGGGAGCUGGUUCAGGUAUUGGUAAAAGCACAUUGAAUGCUAAUUAACAAAAUGUACUUUUCCCAAUGCCGGGGCUGCGUUCCCGACGUCGCAACGAUGCAAGA
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Structure
        10         20         30        40        50        60
AUCAAUUGCUGGUGGCCUA-      -|     A        U     C     GAAUGCU 
                    GGGAGC UGGUUC GGUAUUGG AAAAG ACAUU       A
                    CCCUUG GUCGGG CCGUAACC UUUUC UGUAA       A
AGAACGUAGCAACGCUGCAG      C^     G        C     A     AACAAUU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Sko-Mir-4829-P3_5p* (predicted)

mirBase accessionNone
Sequence
0- CAGGUAUUGGUAAAAGCACAUU -22
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Mature sequence

Sko-Mir-4829-P3_3p

mirBase accessionMIMAT0020040
Sequence
40- UGUACUUUUCCCAAUGCCGGGG -62
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