| MirGeneDB ID | Sko-Mir-4820 |
|---|
| Family name |
MIR-4820 (all species) |
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| Seed |
GAGCUUC |
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| Species |
Saccoglossus (Saccoglossus kowalevskii) |
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| MiRBase ID |
sko-mir-4820
|
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| Paralogues |
|
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| Orthologues |
Pfl-Mir-4820
|
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| Node of Origin (locus) |
Enteropneusta
|
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| Node of Origin (family) |
Enteropneusta
|
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Genome context
(Skow_1.1) |
NW_003124899.1: 533439-533498 [+]
|
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Precursor
(pre-Mir +30nt flank) |
CACAUUCAUCAUAACUGAGACCAUACCUAUGGCUACAGCACGGUUGUAUCAAUGCUGCUAACUGUGAUUGAGCUUCCUUGCUGUAGACAUGGGUAGGCCUUCCACAACAGCACUCGAUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CACAUUCAUCAUAACUG---| A A G C UU A GCUGCU
AG CC UACCUAUG CUACAGCA GG GU UCAAU \
UC GG AUGGGUAC GAUGUCGU CC CG AGUUA A
ACUAGCUCACGACAACACCU^ C - A U UU - GUGUCA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Sko-Mir-4820_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GGCUACAGCACGGUUGUAUCAAU -23
Get sequence
|
|---|
| Mature sequence |
Sko-Mir-4820_3p |
| mirBase accession | MIMAT0020021 |
|---|
| Sequence |
38- UGAGCUUCCUUGCUGUAGACAU -60
Get sequence
|
|---|
