MirGeneDB 2.1

MirGeneDB ID

Sko-Mir-4818-P2

Family name MIR-4818 (all species)
Seed AUUGCAC
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4818d
Paralogues Sko-Mir-4818-P1  Sko-Mir-4818-P3  Sko-Mir-4818-P4  Sko-Mir-4818-P5  Sko-Mir-4818-P6  Sko-Mir-4818-P7 
Orthologues Pfl-Mir-4818-P2 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)
NW_003137342.1: 64676-64736 [-]
Clustered miRNAs
(< 50kb from Mir-4818-P2)
Mir-4818-P6 NW_003137342.1: 63315-63374 [-]
Mir-4818-P5 NW_003137342.1: 63417-63475 [-]
Mir-4818-P4 NW_003137342.1: 64360-64419 [-]
Mir-4818-P3 NW_003137342.1: 64550-64608 [-]
Mir-4818-P2 NW_003137342.1: 64676-64736 [-]
Mir-4818-P1 NW_003137342.1: 65108-65168 [-]
Mir-4818-P7 NW_003137342.1: 65488-65546 [-]
Precursor
(pre-Mir +30nt flank)
UUCUGUUCAGCAGCACUGUGUUGAGUGUAUCCUCUCUAUUGAGUACAACUGUGGAUAGAUCACAUCUCGCAUUGCACUCAAUAGUGGGGCUCCUUUCAGCACCUGAUAUCCUCAUCUAUGA
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Structure
        10          20        30        40        50        60
UUCUGUUCAGCAGCACU--|       UGUAU    U         A   C    GAUAGA 
                   GUGUUGAG     CCUC CUAUUGAGU CAA UGUG      U
                   CACGACUU     GGGG GAUAACUCA GUU ACGC      C
AGUAUCUACUCCUAUAGUC^       UCCUC    U         C   -    UCUACA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
To
Star sequence

Sko-Mir-4818-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- CCUCUCUAUUGAGUACAACUGUG -23
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Mature sequence

Sko-Mir-4818-P2_3p

mirBase accessionMIMAT0020013
Sequence
39- CAUUGCACUCAAUAGUGGGGCU -61
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