| MirGeneDB ID | Sha-Novel-6 |
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| Family name |
SHA-NOVEL-6 (all species) |
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| Seed |
UCAAAUC |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. harrisii
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| Node of Origin (family) |
S. harrisii
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Genome context
(DEVIL_add) |
GL834640.1: 1948343-1948402 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGGGCAGUGUCAUAGAGGGGUGUGACUGGGUUCAAAUCCUGGAGUUACUCCUUGUCAACAACAAUAAGGAGUAACUCUGAGAUUUGAACCUAGUCACACCCACCCCCCAAUGACACAGUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGGCAGUGUCAUAGAG--| CU UGUCAA
GGGUGUGACUGGGUUCAAAUC GGAGUUACUCCU C
CCCACACUGAUCCAAGUUUAG UCUCAAUGAGGA A
GUGACACAGUAACCCCCCA^ AG AUAACA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Novel-6_5p |
| mirBase accession | None |
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| Sequence |
0- UUCAAAUCCUGGAGUUACUCCU -22
Get sequence
|
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| Star sequence |
Sha-Novel-6_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- GAGUAACUCUGAGAUUUGAACC -60
Get sequence
|
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