| MirGeneDB ID | Sha-Novel-5 |
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| Family name |
SHA-NOVEL-5 (all species) |
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| Seed |
ACGCCUA |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. harrisii
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| Node of Origin (family) |
S. harrisii
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Genome context
(DEVIL_add) |
GL857015.1: 123701-123764 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUCUUUGUGUCUCCCGAGCUUAGUACAGCGCCAGGCACAUAGUAGGUGUUUAAUGGAUACGGAUUGGUAGUUAACGCCUACUGUGUGCCGGUCGCCGUGCUCAGCAGUUGGAUCCUCGCCCUGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GUCUUUGUGUCUCCCGA-- U A -| A UAAUGGAUAC
GCU AGUAC GCG CC GGCACAUAGUAGGUGUU G
CGA UCGUG CGC GG CCGUGUGUCAUCCGCAA G
AGUCCCGCUCCUAGGUUGA C C U^ - UUGAUGGUUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Star sequence |
Sha-Novel-5_5p* |
| mirBase accession | None |
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| Sequence |
0- CCAGGCACAUAGUAGGUGUUUA -22
Get sequence
|
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| Mature sequence |
Sha-Novel-5_3p |
| mirBase accession | None |
|---|
| Sequence |
42- AACGCCUACUGUGUGCCGGUCG -64
Get sequence
|
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