MirGeneDB 2.1

MirGeneDB ID

Sha-Novel-4-P3

Family name SHA-NOVEL-4 (all species)
Seed GUGCCCA
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Novel-4-P1a  Sha-Novel-4-P1b  Sha-Novel-4-P2  Sha-Novel-4-P4  Sha-Novel-4-P5a  Sha-Novel-4-P5b 
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) S. harrisii
Genome context
(DEVIL_add)
GL867924.1: 40191-40249 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGGGUGACAGAACUAAUGGCACCUGAUCCUGUGCCCAGUGUGGAAAAGGAAUCCUCUCAGUAGUCCACUUUCCAUCCCUGGGUACUGAUGCCGCUGCCUCCAGCACCACCACACACCU
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Structure
        10          20         30        40          50        
AUGGGUGACAGAACUAAU--    CCUG-   CU        U-       A-|  AUCCUC 
                    GGCA     AUC  GUGCCCAG  GUGGAAA  GGA      \
                    CCGU     UAG  CAUGGGUC  UACCUUU  CCU      U
UCCACACACCACCACGACCU    CGCCG   U-        CC       CA^  GAUGAC 
       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Novel-4-P3_5p

mirBase accessionNone
Sequence
0- UGUGCCCAGUGUGGAAAAGGA -21
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Star sequence

Sha-Novel-4-P3_3p*

mirBase accessionNone
Sequence
36- CACUUUCCAUCCCUGGGUACUGA -59
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