MirGeneDB 2.1

MirGeneDB ID

Sha-Novel-15

Family name SHA-NOVEL-15 (all species)
Seed GUCCGGC
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) S. harrisii
Genome context
(DEVIL_add)
GL867614.1: 335419-335477 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGCUGCAUUUUCAACUGCUGAGUUCCCACUGUCCGGCCUGAAGACACAUUGUGUGACCCUUUCAAACUAUGUAUUUUCAGACCUGAGUGGGCCCUUAGUACACACAUCAUCUUCUUCC
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Structure
        10          20        30        40        50          
UGGCUGCAUUUUCAACU--|     UU     UG  C  C       C    U  GUGACC 
                   GCUGAG  CCCAC  UC GG CUGAAGA ACAU GU      \
                   UGAUUC  GGGUG  AG CC GACUUUU UGUA CA      C
CCUUCUUCUACUACACACA^     CC     --  U  A       A    U  AACUUU 
       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Novel-15_5p

mirBase accessionNone
Sequence
0- UGUCCGGCCUGAAGACACAUUGU -23
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Co-mature sequence

Sha-Novel-15_3p

mirBase accessionNone
Sequence
38- UAUGUAUUUUCAGACCUGAGU -59
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