| MirGeneDB ID | Sha-Novel-12 |
|---|
| Family name |
SHA-NOVEL-12 (all species) |
|---|
| Seed |
GGCUAAG |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
S. harrisii
|
|---|
| Node of Origin (family) |
S. harrisii
|
|---|
Genome context
(DEVIL_add) |
GL849918.1: 206081-206139 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUCCAAAAGAUGUACUGCUUGCCUUGGAGCUGGCUAAGGAUUUAGGGAAGGAGCUAAAUUAGGACUCUUCUCUUCAUCCAAAGCCUAGUUCCAACAUGGCUCUCCAUCUUGUCUGGCAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCCAAAAGAUGUACUGCUU --- -| AA UU AGCUAA
GCC UUGGAGCU GGCU GGAU AGGGAAGG A
CGG AACCUUGA CCGA CCUA UCUCUUCU U
CACGGUCUGUUCUACCUCU- UAC U^ AA CU CAGGAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Sha-Novel-12_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGGCUAAGGAUUUAGGGAAGG -21
Get sequence
|
|---|
| Star sequence |
Sha-Novel-12_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- UUCUCUUCAUCCAAAGCCUAGU -59
Get sequence
|
|---|
