| MirGeneDB ID | Sha-Novel-10 |
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| Family name |
SHA-NOVEL-10 (all species) |
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| Seed |
GGCAGCA |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. harrisii
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| Node of Origin (family) |
S. harrisii
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Genome context
(DEVIL_add) |
GL850009.1: 278238-278296 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CGGGAGGAAGCCCCGCCUUGUGGGGGGGCGUGGCAGCAGGUGAUUGCUGAGGCUGAGGCUUCUUUAGGCCCCAGCUCUCACCUCCCACUCCCCCUCACAACCAACCCCUCGCCCGCCUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CGGGAGGAAGCCCCGCC--| C CAGC UU A GAGGC
UUGUGGGGGGG GUGG AGGUGA GCUG GGCU U
AACACUCCCCC CACC UCCACU CGAC CCGG U
GUCCGCCCGCUCCCCAACC^ U C--- CU C AUUUC
110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Novel-10_5p |
| mirBase accession | None |
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| Sequence |
0- UGGCAGCAGGUGAUUGCUGAGGCU -24
Get sequence
|
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| Star sequence |
Sha-Novel-10_3p* |
| mirBase accession | None |
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| Sequence |
38- CCCCAGCUCUCACCUCCCACU -59
Get sequence
|
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