MirGeneDB 2.1

MirGeneDB ID

Sha-Mir-430-o24

Family name MIR-430 (all species)
Seed AAGUGCU
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-430-o10  Sha-Mir-430-o11  Sha-Mir-430-o12  Sha-Mir-430-o13  Sha-Mir-430-o14  Sha-Mir-430-o15  Sha-Mir-430-o16  Sha-Mir-430-o17  Sha-Mir-430-o18  Sha-Mir-430-o19  Sha-Mir-430-o20  Sha-Mir-430-o21  Sha-Mir-430-o22  Sha-Mir-430-o23  Sha-Mir-430-o25  Sha-Mir-430-o26  Sha-Mir-430-o27  Sha-Mir-430-o29  Sha-Mir-430-P1  Sha-Mir-430-P2  Sha-Mir-430-P3  Sha-Mir-430-P51 
Orthologues Hsa-Mir-430-P24  Mml-Mir-430-P24a1  Mml-Mir-430-P24a2  Mml-Mir-430-P24b 
Node of Origin (locus) S. harrisii
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)
GL850554.1: 7215-7274 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACCAUGUUAGAACAAACCUCUUCUAGCUCAUCCUAAUUGAGGGCAUUUGUUGGUUAUUUGAGGAACAUAAGUGCUCUCAAUUGGGGUAGAAUAGUCUGAGGAAGAAUCAUCCCGUGAGG
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Structure
        10         20         30         40        50         
GACCAUGUUAGAACAAA-    UU-|  GC  -                     UGGUUAU 
                  CCUC   CUA  UC AUCCUAAUUGAGGGCAUUUGU       U
                  GGAG   GAU  AG UGGGGUUAACUCUCGUGAAUA       U
GGAGUGCCCUACUAAGAA    UCU^  A-  A                     CAAGGAG 
.       110       100         90        80        70        60
Deep sequencing
3' NTU No
MotifsNo
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-430-o24_5p* (predicted)

mirBase accessionNone
Sequence
0- AUCCUAAUUGAGGGCAUUUGUU -22
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Mature sequence

Sha-Mir-430-o24_3p (predicted)

mirBase accessionNone
Sequence
38- UAAGUGCUCUCAAUUGGGGUAG -60
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