| MirGeneDB ID | Sha-Mir-202 |
|---|
| Family name |
MIR-202 (all species) |
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| Seed |
UCCUAUG |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
sha-mir-202
|
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| Paralogues |
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| Orthologues |
Aca-Mir-202
Ami-Mir-202
Bta-Mir-202
Cfa-Mir-202
Cli-Mir-202
Cmi-Mir-202
Cpi-Mir-202
Cpo-Mir-202
Dno-Mir-202
Dre-Mir-202
Ebu-Mir-202
Ete-Mir-202
Gga-Mir-202
Gja-Mir-202
Gmo-Mir-202
Hsa-Mir-202
Lch-Mir-202
Loc-Mir-202
Mal-Mir-202
Mml-Mir-202
Mmu-Mir-202
Mun-Mir-202
Oan-Mir-202
Ocu-Mir-202
Pbv-Mir-202
Pma-Mir-202-P5
Pma-Mir-202-P6
Rno-Mir-202
Spt-Mir-202
Sto-Mir-202
Tgu-Mir-202
Tni-Mir-202
Xla-Mir-202-P3
Xla-Mir-202-P4
Xtr-Mir-202-P1
Xtr-Mir-202-P2
|
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| Node of Origin (locus) |
Vertebrata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(DEVIL_add) |
GL835536.1: 120429-120486 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
ACCCAGCUCAGAAUGGCUCGUGGUUCCUUUUUCCUAUGCAUAUACUUCUUUGAGAAUAAAUUCUAAAGAGGCGUAGGGCAUGGGAAAAUGGGGCCACGGAGCUCCUCCUCCUCGUCUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACCCAGCUCAGAAUGGC-- U A-| UA GAGAAU
UCGUGGUUCC UUUUCCUAUGC UA CUUCUUU \
GGCACCGGGG AAAAGGGUACG AU GGAGAAA A
UUCUGCUCCUCCUCCUCGA U GG^ GC UCUUAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Mir-202_5p |
| mirBase accession | MIMAT0022780 |
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| Sequence |
0- UUCCUAUGCAUAUACUUCUUU -21
Get sequence
|
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| Star sequence |
Sha-Mir-202_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- AGAGGCGUAGGGCAUGGGAAAA -58
Get sequence
|
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