Mir-181-P1c

MirGeneDB ID

Sha-Mir-181-P1c

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-181-P1a Sha-Mir-181-P1b Sha-Mir-181-P2a Sha-Mir-181-P2b Sha-Mir-181-P2c

Orthologues

Aca-Mir-181-P1c Ami-Mir-181-P1c Bta-Mir-181-P1c Cfa-Mir-181-P1c Cmi-Mir-181-P1c Cpi-Mir-181-P1c Cpo-Mir-181-P1c Dno-Mir-181-P1c Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Ete-Mir-181-P1c Gja-Mir-181-P1c Gmo-Mir-181-P1c1 Gmo-Mir-181-P1c2 Hsa-Mir-181-P1c Lch-Mir-181-P1c Loc-Mir-181-P1c Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mdo-Mir-181-P1c Mml-Mir-181-P1c Mmu-Mir-181-P1c Mun-Mir-181-P1c Oan-Mir-181-P1c Ocu-Mir-181-P1c Pbv-Mir-181-P1c Rno-Mir-181-P1c Spt-Mir-181-P1c Sto-Mir-181-P1c Tni-Mir-181-P1c1 Tni-Mir-181-P1c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL841415.1: 748549-748611 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGACUUCCAGAGAUGCCAGAGGCUUGGGGGAACAUUCAACGCUGUCGGUGAGUUUGAGCAGCUGAAGGCAAACCAUCGACCGUUGAGUGGACCCUGCAGCCUUAACCUGCCACCUGACGCCUG

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Structure

        10          20        30        40        50        60  
CGACUUCCAGAGAUGCCA--|     UG    AA         CU       A  UUGAGCAG 
                    GAGGCU  GGGG  CAUUCAACG  GUCGGUG GU        C
                    UUCCGA  UCCC  GUGAGUUGC  CAGCUAC CA        U
GUCCGCAGUCCACCGUCCAA^     CG    AG         --       -  AACGGAAG 
 120       110       100        90          80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-181-P1c_5p

mirBase accession

None

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

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Star sequence

Sha-Mir-181-P1c_3p*

mirBase accession

None

Sequence

41- ACCAUCGACCGUUGAGUGGACC -63

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