MirGeneDB ID | Sha-Mir-153-P2 |
Family name |
MIR-153 (all species) |
Seed |
UGCAUAG |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
|
Paralogues |
Sha-Mir-153-P1
|
Orthologues |
Aca-Mir-153-P2
Ami-Mir-153-P2
Asu-Mir-153
Bfl-Mir-153
Bla-Mir-153
Bpl-Mir-153
Bta-Mir-153-P2
Cfa-Mir-153-P2
Cgi-Mir-153
Cin-Mir-153
Cli-Mir-153-P2
Cmi-Mir-153-P2
Cpi-Mir-153-P2
Cte-Mir-153
Dma-Mir-153
Dno-Mir-153-P2
Dpu-Mir-153
Dre-Mir-153-P2a
Dre-Mir-153-P2b
Gga-Mir-153-P2
Gja-Mir-153-P2
Gmo-Mir-153-P2a
Hsa-Mir-153-P2
Isc-Mir-153
Lan-Mir-153
Lch-Mir-153-P2
Lgi-Mir-153
Loc-Mir-153-P2
Mal-Mir-153-P2a
Mal-Mir-153-P2b
Mdo-Mir-153-P2
Mml-Mir-153-P2
Mun-Mir-153-P2
Npo-Mir-153
Oan-Mir-153-P2
Obi-Mir-153
Ovu-Mir-153
Pbv-Mir-153-P2
Pfl-Mir-153
Pma-Mir-153-o2
Pmi-Mir-153
Sko-Mir-153
Sme-Mir-153
Spt-Mir-153-P2
Spu-Mir-153
Sto-Mir-153-P2
Tgu-Mir-153-P2
Tni-Mir-153-P2a
Tni-Mir-153-P2b
Xbo-Mir-153
Xla-Mir-153-P2c
Xla-Mir-153-P2d
Xtr-Mir-153-P2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (DEVIL_add) |
GL849891.1: 1182396-1182455 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUCUGUCUCUCUCCCUCACAGCUGCCAGUGUCAUUUUUGUGAUCUGCAGCUAGUAUUAUGGCUUCAGUUGCAUAGUCACAAAAGUGAUCAUUGGCAGGUGUGGCUGCCGCACGGACAGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UCUCUGUCUCUCUCCCUC G - C-| AGUAUU
ACA CUGCCAGUG UCAUUUUUGUGAU UGCAGCU A
UGU GACGGUUAC AGUGAAAACACUG ACGUUGA U
GGACAGGCACGCCGUCGG G U AU^ CUUCGG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Star sequence |
Sha-Mir-153-P2_5p* |
mirBase accession | None |
Sequence |
0- GUCAUUUUUGUGAUCUGCAGCU -22
Get sequence
|
Mature sequence |
Sha-Mir-153-P2_3p |
mirBase accession | None |
Sequence |
38- UUGCAUAGUCACAAAAGUGAUC -60
Get sequence
|