| MirGeneDB ID | Sha-Mir-130-P1a |
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| Family name |
MIR-130 (all species) |
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| Seed |
AGUGCAA |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
Sha-Mir-130-P1b
Sha-Mir-130-P1c
Sha-Mir-130-P2b
Sha-Mir-130-P3b
Sha-Mir-130-P4a
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| Orthologues |
Aca-Mir-130-P1a
Ami-Mir-130-P1a
Cli-Mir-130-P1a
Cmi-Mir-130-P1a
Cpi-Mir-130-P1a
Dre-Mir-130-P1a1
Dre-Mir-130-P1a2
Gga-Mir-130-P1a
Gja-Mir-130-P1a
Gmo-Mir-130-P1a1
Gmo-Mir-130-P1a2
Lch-Mir-130-P1a
Loc-Mir-130-P1a
Mal-Mir-130-P1a1
Mal-Mir-130-P1a2
Mdo-Mir-130-P1a
Mun-Mir-130-P1a
Oan-Mir-130-P1a
Pbv-Mir-130-P1a
Spt-Mir-130-P1a
Sto-Mir-130-P1a
Tgu-Mir-130-P1a
Tni-Mir-130-P1a2
Xla-Mir-130-P1a3
Xla-Mir-130-P1a4
Xtr-Mir-130-P1a
|
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(DEVIL_add) |
Mir-130-P1b>1: 104-161 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGGAGCCGGACCCCACUGCUGGUGGCCGCGGCCCUUUUCUUGUUGCCCUGCUGAGCCGCAGAGGGGCAGUGCAAUGUUAAAAGGGCAUCGGCCGCCAGCGCCAGCUUCGGAAGGACGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GGGAGCCGGACCCCACU--| CG CU C GAGCC
GCUGGUGGCCG GCCCUUUU UGUUGC CUGCU G
CGACCGCCGGC CGGGAAAA GUAACG GACGG C
CGCAGGAAGGCUUCGACCG^ UA UU U GGAGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Star sequence |
Sha-Mir-130-P1a_5p* |
| mirBase accession | None |
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| Sequence |
0- GCCCUUUUCUUGUUGCCCUGCU -22
Get sequence
|
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| Mature sequence |
Sha-Mir-130-P1a_3p |
| mirBase accession | None |
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| Sequence |
36- CAGUGCAAUGUUAAAAGGGCAU -58
Get sequence
|
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