MirGeneDB 2.1
MirGeneDB ID

Sha-Mir-1-P3

Family name MIR-1 (all species)
Seed GGAAUGU
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-1-P1  Sha-Mir-1-P2 
Orthologues Aae-Mir-1  Aca-Mir-1-P3  Ami-Mir-1-P3  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bta-Mir-1-P3  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P3  Cgi-Mir-1  Cin-Mir-1  Cli-Mir-1-P3  Cmi-Mir-1-P3  Cpi-Mir-1-P3  Cpo-Mir-1-P3  Cte-Mir-1  Dan-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P3  Dpu-Mir-1  Dre-Mir-1-P3  Dsi-Mir-1  Dya-Mir-1  Esc-Mir-1  Ete-Mir-1-P3  Gga-Mir-1-P3  Gja-Mir-1-P3  Gmo-Mir-1-P3  Hme-Mir-1  Hsa-Mir-1-P3  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P3  Lgi-Mir-1  Loc-Mir-1-P3  Mal-Mir-1-P3  Mdo-Mir-1-P3  Mml-Mir-1-P3  Mmu-Mir-1-P3  Mun-Mir-1-P3  Oan-Mir-1-P3  Obi-Mir-1  Ocu-Mir-1-P3  Ovu-Mir-1  Pbv-Mir-1-P3  Pfl-Mir-1  Pma-Mir-1-o3  Pmi-Mir-1  Rno-Mir-1-P3  Sko-Mir-1  Spt-Mir-1-P3  Spu-Mir-1  Sto-Mir-1-P3  Tca-Mir-1  Tgu-Mir-1-P3  Tni-Mir-1-P3  Xbo-Mir-1  Xla-Mir-1-P3a  Xla-Mir-1-P3b  Xtr-Mir-1-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(DEVIL_add)		 GL834662.1: 616687-616747 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCGCAUAUUGAAAACUACCUGCUUGAGAAACAUACUACUUUAUAUGCCCAUAUGAACGUGCUAAGCUAUGGAAUGUAAAGAAGUAUGUAUUUCCGGUAGGGCAUCUCUCUCAUGGGAGCA
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Structure
        10          20        30        40        50        60
UGCGCAUAUUGAAAACUA--|     U    A       A        GC     UGAACG 
                    CCUGCU GAGA ACAUACU CUUUAUAU  CCAUA      U
                    GGAUGG CUUU UGUAUGA GAAAUGUA  GGUAU      G
ACGAGGGUACUCUCUCUACG^     C    A       A        A-     CGAAUC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-1-P3_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACAUACUACUUUAUAUGCCCAUA -23
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Mature sequence

Sha-Mir-1-P3_3p
mirBase accessionNone
Sequence 
39- UGGAAUGUAAAGAAGUAUGUAU -61
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