MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-9-P2

Family name MIR-9 (all species)
Seed CUUUGGU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-9a-2
Paralogues Rno-Mir-9-P1  Rno-Mir-9-P3 
Orthologues Aca-Mir-9-P2  Ami-Mir-9-P2  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P2  Cfa-Mir-9-P2  Cin-Mir-9  Cli-Mir-9-P2  Cmi-Mir-9-P2  Cpi-Mir-9-P2  Cpo-Mir-9-P2  Cte-Mir-9  Dno-Mir-9-P2  Dre-Mir-9-P2a  Dre-Mir-9-P2b  Esc-Mir-9  Ete-Mir-9-P2  Gga-Mir-9-P2  Gja-Mir-9-P2  Gmo-Mir-9-P2b  Hme-Mir-9-o2  Hsa-Mir-9-P2  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P2  Lgi-Mir-9  Loc-Mir-9-P2  Mal-Mir-9-P2b  Mdo-Mir-9-P2  Mml-Mir-9-P2  Mmu-Mir-9-P2  Mun-Mir-9-P2  Npo-Mir-9  Oan-Mir-9-P2  Obi-Mir-9  Ocu-Mir-9-P2  Ovu-Mir-9  Pbv-Mir-9-P2  Pma-Mir-9-o2  Pmi-Mir-9  Sha-Mir-9-P2  Spt-Mir-9-P2  Spu-Mir-9  Sto-Mir-9-P2  Tgu-Mir-9-P2  Tni-Mir-9-P2b  Xbo-Mir-9  Xla-Mir-9-P2c  Xla-Mir-9-P2d  Xtr-Mir-9-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(rn6)
chr2: 11884686-11884745 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGACAGCCUUGUGAGGGAAGCGAGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUAUUGGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUCCUUCAAGAUCACCGAGGAGUGCU
Get precursor sequence
Structure
        10           20        30        40        50         
AGACAGCCUUGUGAGGG---|  C     G   UC               G     GUGUA 
                    AAG GAGUU UUA  UUUGGUUAUCUAGCU UAUGA     U
                    UUC CUCAA AAU  AAGCCAAUAGAUCGA AUACU     U
UCGUGAGGAGCCACUAGAAC^  -     A   GA               A     UCUGG 
.       110       100         90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-9-P2_5p

mirBase accessionMIMAT0000781
Sequence
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
Proposed targets microrna.org: MIMAT0000781
TargetScanVert: rno-miR-9a-5p
miRDB: MIMAT0000781
Star sequence

Rno-Mir-9-P2_3p*

mirBase accessionMIMAT0004708
Sequence
37- AUAAAGCUAGAUAACCGAAAGUA -60
Get sequence
Proposed targets microrna.org: MIMAT0004708
TargetScanVert: rno-miR-9a-3p
miRDB: MIMAT0004708