MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-8-P1b

Family name MIR-8 (all species)
Seed AAUACUG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-200c
Paralogues Rno-Mir-8-P1a  Rno-Mir-8-P2a  Rno-Mir-8-P2b  Rno-Mir-8-P3a 
Orthologues Aae-Mir-8  Asu-Mir-8  Bfl-Mir-8-P1-v1  Bfl-Mir-8-P1-v2  Bge-Mir-8  Bla-Mir-8-P1  Bpl-Mir-8  Bta-Mir-8-P1b  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P1b  Cgi-Mir-8  Cin-Mir-8-P1  Cpo-Mir-8-P1b  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dpu-Mir-8  Dre-Mir-8-P1b  Dsi-Mir-8  Dya-Mir-8  Esc-Mir-8  Ete-Mir-8-P1b  Hme-Mir-8  Hsa-Mir-8-P1b  Isc-Mir-8  Lan-Mir-8  Lch-Mir-8-P1b  Lgi-Mir-8  Mdo-Mir-8-P1b  Mml-Mir-8-P1b  Mmu-Mir-8-P1b  Npo-Mir-8  Oan-Mir-8-P1b  Obi-Mir-8  Ocu-Mir-8-P1b  Ovu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Sha-Mir-8-P1b  Sko-Mir-8  Spu-Mir-8  Tca-Mir-8 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(rn6)
chr4: 157236788-157236850 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P1b)
Mir-8-P2b chr4: 157236360-157236424 [-] UCSC Ensembl
Mir-8-P1b chr4: 157236788-157236850 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGAAGGUGGACUGGUUGGGUAGGGGCCCUCGUCUUACCCAGCAGUGUUUGGGUGCUGGUUGGGAGUCUCUAAUACUGCCGGGUAAUGAUGGAGGCCCCUGCCCCUGUGUCAUCGGCGUCCAU
Get precursor sequence
Structure
        10          20        30         40        50        60
CUGAAGGUGGACUGGUU--           CU    -|     A        U  GUGCUGG 
                   GGGUAGGGGCC  CGUC UUACCC GCAGUGUU GG       U
                   CCCGUCCCCGG  GUAG AAUGGG CGUCAUAA CU       U
UACCUGCGGCUACUGUGUC           AG    U^     C        U  CUGAGGG 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-8-P1b_5p*

mirBase accessionMIMAT0017150
Sequence
0- CGUCUUACCCAGCAGUGUUUGG -22
Get sequence
Proposed targets TargetScanVert: rno-miR-200c-5p
miRDB: MIMAT0017150
Mature sequence

Rno-Mir-8-P1b_3p

mirBase accessionMIMAT0000873
Sequence
40- UAAUACUGCCGGGUAAUGAUGGA -63
Get sequence
Proposed targets microrna.org: MIMAT0000873
TargetScanVert: rno-miR-200c-3p
miRDB: MIMAT0000873