MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-676

Family name MIR-676 (all species)
Seed CGUCCUG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-676
Paralogues
Orthologues Cfa-Mir-676  Cpo-Mir-676  Dno-Mir-676  Hsa-Mir-676  Mml-Mir-676  Mmu-Mir-676  Ocu-Mir-676 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)
chrX: 70207033-70207089 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGUGUCAUGGCUUCACCUGAAUGCAUGACUCUGCAACCUUAGGACUUGCAGAAUUAACAGAAUGCCGUCCUGAGCUUGUCGAGCUAUGCGUUUCUGGGCAUUUCAUCUCUACAGA
Get precursor sequence
Structure
        10         20         30        40        50        
UUUGUGUCAUGGCUUCA-  U-|        A   U    C        UU   GAAUU 
                  CC  GAAUGCAUG CUC GCAA CUUAGGAC  GCA     A
                  GG  UUUGCGUAU GAG UGUU GAGUCCUG  CGU     A
AGACAUCUCUACUUUACG  UC^        C   C    C        C-   AAGAC 
     110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsNo
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-676_5p*

mirBase accessionNone
Sequence
0- CUCUGCAACCUUAGGACUUGCA -22
Get sequence
Mature sequence

Rno-Mir-676_3p

mirBase accessionMIMAT0037264
Sequence
36- CCGUCCUGAGCUUGUCGAGCU -57
Get sequence
Proposed targets TargetScanVert: rno-miR-676
miRDB: MIMAT0037264