| MirGeneDB ID | Rno-Mir-598-P1 |
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| Family name |
MIR-598 (all species) |
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| Seed |
ACGUCAU |
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| Species |
Norway rat (Rattus norvegicus) |
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| MiRBase ID |
rno-mir-598-1
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| Paralogues |
Rno-Mir-598-P2
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| Orthologues |
Cpo-Mir-598
Ete-Mir-598
Hsa-Mir-598
Mml-Mir-598
Mmu-Mir-598
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| Node of Origin (locus) |
R. norvegicus
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| Node of Origin (family) |
Eutheria
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Genome context
(rn6) |
chr15: 47057506-47057564 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAGGAAAGCUUCAGGAUGCUGCUGAUGCUGGCGGUGAUGCCGAUGGUGCGAGCUGAAAAUGGGCUGCUACGUCAUCGUCGUCAUCGUUAUCAUCAUCAUCAGCACAGCCAUCAGAUCGC
Get precursor sequence
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| Structure | 10 20 30 40 50
GAGGAAAGCUUCAGGAU--|C C C C GU - UGAAA
G UG UGAUG UGGCGGUGAUG CGAUG GCG AGC A
C AC ACUAC AUUGCUACUGC GCUAC UGC UCG U
CGCUAGACUACCGACACGA^U U U U -- A UCGGG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Ad |
Br |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Co |
Co |
Co |
Co |
Dr |
Dr |
Du |
Du |
Du |
Du |
He |
He |
Hi |
Hi |
Il |
Il |
Je |
Je |
Ki |
Ki |
Ki |
Ki |
Li |
Li |
Li |
Li |
Me |
Me |
Mu |
Mu |
Mu |
Mu |
Mu |
Mu |
Mu |
Mu |
Ov |
Pa |
Pa |
St |
St |
St |
Te |
Ut |
Wh |
Br |
Fa |
He |
Ki |
La |
Li |
Li |
Lu |
Mu |
Pa |
Sk |
Sm |
Sp |
St |
Te |
Th |
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| Star sequence |
Rno-Mir-598-P1_5p* |
| mirBase accession | MIMAT0005324 |
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| Sequence |
0- GCGGUGAUGCCGAUGGUGCGAGC -23
Get sequence
|
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| Mature sequence |
Rno-Mir-598-P1_3p |
| mirBase accession | MIMAT0005325 |
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| Sequence |
37- UACGUCAUCGUCGUCAUCGUUA -59
Get sequence
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