Mir-506-P19

MirGeneDB ID

Rno-Mir-506-P19

Family name

MIR-506 (all species)

Seed

AAAGCCA

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-742

Paralogues

Rno-Mir-506-P1 Rno-Mir-506-P2 Rno-Mir-506-P6 Rno-Mir-506-P7 Rno-Mir-506-P14 Rno-Mir-506-P15 Rno-Mir-506-P17 Rno-Mir-506-P18 Rno-Mir-506-P20 Rno-Mir-506-P21 Rno-Mir-506-P22 Rno-Mir-506-P23 Rno-Mir-506-P24 Rno-Mir-506-P25 Rno-Mir-506-P26 Rno-Mir-506-P28

Orthologues

Mmu-Mir-506-P19

Node of Origin (locus)

Muridae

Node of Origin (family)

Eutheria

Genome context
(rn6)

chrX: 151260323-151260379 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P19)

Mir-506-P20 chrX: 151252838-151252893 [-] UCSC Ensembl
Mir-506-P21 chrX: 151253328-151253384 [-] UCSC Ensembl
Mir-506-P19 chrX: 151260323-151260379 [-] UCSC Ensembl
Mir-506-P26 chrX: 151260712-151260770 [-] UCSC Ensembl
Mir-506-P17 chrX: 151272114-151272171 [-] UCSC Ensembl
Mir-506-P28 chrX: 151272836-151272891 [-] UCSC Ensembl
Mir-506-P18 chrX: 151274374-151274430 [-] UCSC Ensembl
Mir-506-P14 chrX: 151276038-151276097 [-] UCSC Ensembl
Mir-506-P24 chrX: 151281998-151282055 [-] UCSC Ensembl
Mir-506-P23 chrX: 151283471-151283527 [-] UCSC Ensembl
Mir-506-P25 chrX: 151283920-151283976 [-] UCSC Ensembl
Mir-506-P22 chrX: 151287797-151287853 [-] UCSC Ensembl
Mir-3580 chrX: 151295627-151295682 [-] UCSC Ensembl
Mir-506-P15 chrX: 151297377-151297433 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGUGGUUCUAGAGCGCCUGGGCAGUGCUUUACUCACAUGGUUGCUAAUCACGUGAAAUGUAAGUGAAAGCCACCAUGUUGGGUAAAGUAAAGCUCAUCAUGUUCCUCAUUUGUUGU

Get precursor sequence

Structure

        10          20        30         40        50        
UUGUGGUUCUAGAGCGCC--     AG          -|      U   AA    GUGAA 
                    UGGGC  UGCUUUACUC ACAUGGU GCU  UCAC     \
                    ACUCG  AUGAAAUGGG UGUACCA CGA  AGUG     A
UGUUGUUUACUCCUUGUACU     AA          U^      C   A-    AAUGU 
     110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Star sequence

Rno-Mir-506-P19_5p*

mirBase accession

MIMAT0017314

Sequence

0- UACUCACAUGGUUGCUAAUCAC -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-742-5p
miRDB: MIMAT0017314

Mature sequence

Rno-Mir-506-P19_3p

mirBase accession

MIMAT0005333

Sequence

35- GAAAGCCACCAUGUUGGGUAAA -57

Get sequence

Proposed targets

microrna.org: MIMAT0005333
TargetScanVert: rno-miR-742-3p
miRDB: MIMAT0005333