MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-218-P2

Family name MIR-218 (all species)
Seed UGUGCUU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-218a-1
Paralogues Rno-Mir-218-P4 
Orthologues Aca-Mir-218-P2  Ami-Mir-218-P2  Bta-Mir-218-P2  Cfa-Mir-218-P2  Cli-Mir-218-P2  Cmi-Mir-218-P2  Cpi-Mir-218-P2  Cpo-Mir-218-P2  Dno-Mir-218-P2  Dre-Mir-218-P2  Ete-Mir-218-P2  Gga-Mir-218-P2  Gja-Mir-218-P2  Gmo-Mir-218-P2  Hsa-Mir-218-P2  Lch-Mir-218-P2  Loc-Mir-218-P2  Mal-Mir-218-P2  Mdo-Mir-218-P2  Mml-Mir-218-P2  Mmu-Mir-218-P2  Mun-Mir-218-P2  Oan-Mir-218-P2  Ocu-Mir-218-P2  Pbv-Mir-218-P2  Pma-Mir-218-o2  Sha-Mir-218-P2  Spt-Mir-218-P2  Sto-Mir-218-P2  Tgu-Mir-218-P2  Tni-Mir-218-P2  Xla-Mir-218-P2a  Xla-Mir-218-P2b  Xtr-Mir-218-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr14: 66923105-66923168 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUGUAGUGAUAACGUAGCGAGAUUUUCUGUUGUGCUUGAUCUAACCAUGUGCUUGCGAGGUAUGAGUAAAACAUGGUUCCGUCAAGCACCAUGGAACGUCACGCAGCUUUCUACAGCAUGACA
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Structure
        10          20        30        40        50        60 
GGUGUAGUGAUAACGUA--|  A   U      U         CU        GCUUGCGAG 
                   GCG GAU UUCUGU GUGCUUGAU  AACCAUGU         G
                   CGC CUG AAGGUA CACGAACUG  UUGGUACA         U
ACAGUACGACAUCUUUCGA^  A   C      C         CC        AAAUGAGUA 
  120       110       100        90        80        70
Deep sequencing
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CommentThere are Dicer cuts ranging from +1 to +4 on both arms but this represents the highest mature form across most vertebrates.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-218-P2_5p
mirBase accessionMIMAT0000888
Sequence 
0- UUGUGCUUGAUCUAACCAUGU -21
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Proposed targets microrna.org: MIMAT0000888
TargetScanVert: rno-miR-218a-5p
miRDB: MIMAT0000888
Star sequence

Rno-Mir-218-P2_3p*
mirBase accessionMIMAT0017162
Sequence 
43- AUGGUUCCGUCAAGCACCAUG -64
Get sequence
Proposed targets TargetScanVert: rno-miR-218a-1-3p
miRDB: MIMAT0017162