MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-202

Family name MIR-202 (all species)
Seed UCCUAUG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-202
Paralogues
Orthologues Aca-Mir-202  Ami-Mir-202  Bta-Mir-202  Cfa-Mir-202  Cli-Mir-202  Cmi-Mir-202  Cpi-Mir-202  Cpo-Mir-202  Dno-Mir-202  Dre-Mir-202  Ebu-Mir-202  Ete-Mir-202  Gga-Mir-202  Gja-Mir-202  Gmo-Mir-202  Hsa-Mir-202  Lch-Mir-202  Loc-Mir-202  Mal-Mir-202  Mml-Mir-202  Mmu-Mir-202  Mun-Mir-202  Oan-Mir-202  Ocu-Mir-202  Pbv-Mir-202  Pma-Mir-202-P5  Pma-Mir-202-P6  Sha-Mir-202  Spt-Mir-202  Sto-Mir-202  Tgu-Mir-202  Tni-Mir-202  Xla-Mir-202-P3  Xla-Mir-202-P4  Xtr-Mir-202-P1  Xtr-Mir-202-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr1: 212295636-212295693 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCUGCACAUUCUCGCUGGCUGUUCCUUUUUCCUAUGCAUAUACUUCUUUGUGGAUCUGGUCUAAAGAGGUAUAGCGCAUGGGAAAAUGGAGCAGUGAGAUCUUCCCCACCCAAACA
Get precursor sequence
Structure
        10          20        30        40         50        
GGCCUGCACAUUCUCGC-- G        U           A-|          GUGGAU 
                   U GCUGUUCC UUUUCCUAUGC  UAUACUUCUUU      \
                   A UGACGAGG AAAAGGGUACG  AUAUGGAGAAA      C
ACAAACCCACCCCUUCUAG G        U           CG^          UCUGGU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-202_5p

mirBase accessionMIMAT0012822
Sequence
0- UUCCUAUGCAUAUACUUCUUU -21
Get sequence
Proposed targets microrna.org: MIMAT0012822
TargetScanVert: rno-miR-202-5p
miRDB: MIMAT0012822
Star sequence

Rno-Mir-202_3p*

mirBase accessionMIMAT0017355
Sequence
36- AGAGGUAUAGCGCAUGGGAAAA -58
Get sequence
Proposed targets TargetScanVert: rno-miR-202-3p
miRDB: MIMAT0017355