MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-154-P29-v2

Family name MIR-154 (all species)
Seed AGGUCAC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-1193
Paralogues Rno-Mir-154-P1  Rno-Mir-154-P2-v1  Rno-Mir-154-P2-v2  Rno-Mir-154-P3a-v1  Rno-Mir-154-P3a-v2  Rno-Mir-154-P4-o1  Rno-Mir-154-P5  Rno-Mir-154-P6  Rno-Mir-154-P7  Rno-Mir-154-P8  Rno-Mir-154-P9  Rno-Mir-154-P10  Rno-Mir-154-P12  Rno-Mir-154-P13  Rno-Mir-154-P14  Rno-Mir-154-P15  Rno-Mir-154-P17  Rno-Mir-154-P18  Rno-Mir-154-P19  Rno-Mir-154-P20-v1  Rno-Mir-154-P20-v2  Rno-Mir-154-P21  Rno-Mir-154-P22  Rno-Mir-154-P26  Rno-Mir-154-P29-v1  Rno-Mir-154-P30  Rno-Mir-154-P34  Rno-Mir-154-P36 
Orthologues Bta-Mir-154-P29  Cfa-Mir-154-P29  Cpo-Mir-154-P29  Dno-Mir-154-P29  Ete-Mir-154-P29  Hsa-Mir-154-P29  Mml-Mir-154-P29  Mmu-Mir-154-P29-v1  Mmu-Mir-154-P29-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)
chr6: 133864730-133864784 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P29-v2)
Mir-154-P7 chr6: 133857715-133857772 [+] UCSC Ensembl
Mir-154-P13 chr6: 133858859-133858914 [+] UCSC Ensembl
Mir-154-P2-v1 chr6: 133859329-133859383 [+] UCSC Ensembl
Mir-154-P2-v2 chr6: 133859330-133859382 [+] UCSC Ensembl
Mir-154-P8 chr6: 133860500-133860556 [+] UCSC Ensembl
Mir-154-P3a-v2 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P3a-v1 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P26 chr6: 133861509-133861566 [+] UCSC Ensembl
Mir-154-P4-o1 chr6: 133862190-133862249 [+] UCSC Ensembl
Mir-154-P18 chr6: 133864385-133864440 [+] UCSC Ensembl
Mir-154-P29-v1 chr6: 133864729-133864785 [+] UCSC Ensembl
Mir-154-P29-v2 chr6: 133864730-133864784 [+] UCSC Ensembl
Mir-666 chr6: 133866541-133866601 [+] UCSC Ensembl
Mir-154-P22 chr6: 133866672-133866729 [+] UCSC Ensembl
Mir-154-P19 chr6: 133868298-133868357 [+] UCSC Ensembl
Mir-667 chr6: 133869584-133869647 [+] UCSC Ensembl
Mir-376-P4 chr6: 133872453-133872510 [+] UCSC Ensembl
Mir-376-P2 chr6: 133873110-133873167 [+] UCSC Ensembl
Mir-376-P1 chr6: 133873618-133873675 [+] UCSC Ensembl
Mir-154-P34 chr6: 133874161-133874223 [+] UCSC Ensembl
Mir-154-P9 chr6: 133876615-133876677 [+] UCSC Ensembl
Mir-154-P17 chr6: 133877137-133877194 [+] UCSC Ensembl
Mir-154-P21 chr6: 133877840-133877901 [+] UCSC Ensembl
Mir-544 chr6: 133879179-133879235 [+] UCSC Ensembl
Mir-154-P10 chr6: 133884190-133884247 [+] UCSC Ensembl
Mir-134 chr6: 133884554-133884614 [+] UCSC Ensembl
Mir-154-P15 chr6: 133885310-133885368 [+] UCSC Ensembl
Mir-154-P1 chr6: 133888600-133888657 [+] UCSC Ensembl
Mir-154-P20-v2 chr6: 133889296-133889351 [+] UCSC Ensembl
Mir-154-P20-v1 chr6: 133889297-133889350 [+] UCSC Ensembl
Mir-154-P6 chr6: 133890697-133890756 [+] UCSC Ensembl
Mir-541 chr6: 133892668-133892733 [+] UCSC Ensembl
Mir-154-P36 chr6: 133893432-133893485 [+] UCSC Ensembl
Mir-154-P14 chr6: 133893579-133893634 [+] UCSC Ensembl
Mir-154-P5 chr6: 133893706-133893761 [+] UCSC Ensembl
Mir-154-P12 chr6: 133894007-133894062 [+] UCSC Ensembl
Mir-3072 chr6: 133898823-133898879 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCUUACUGCUCUCAGGGUAGCUGUGAGGAUGGUAAACCGGUGACGUGCACUUCAUUUAUGCUGUAGGUCACCCGUUUUACUAUCCGCCAGCACCCAGACCGUCUGUGGGAUGAU
Get precursor sequence
Structure
        10        20           30         40        50      
UGCUUACUGCUCUCAGGGUA---|   UGA          - C      G    CUUCA 
                       GCUG   GGAUGGUAAA C GGUGAC UGCA     U
                       CGAC   CCUAUCAUUU G CCACUG AUGU     U
UAGUAGGGUGUCUGCCAGACCCA^   CG-          U C      G    CGUAU 
   110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-154-P29-v2_5p*

mirBase accessionMIMAT0017858
Sequence
0- UGGUAAACCGGUGACGUGCA -20
Get sequence
Proposed targets TargetScanVert: rno-miR-1193-5p
miRDB: MIMAT0017858
Mature sequence

Rno-Mir-154-P29-v2_3p

mirBase accessionMIMAT0017859
Sequence
34- UAGGUCACCCGUUUUACUAUC -55
Get sequence
Proposed targets TargetScanVert: rno-miR-1193-3p
miRDB: MIMAT0017859