MirGeneDB 2.1

MirGeneDB ID

Pmi-Mir-31-P3

Family name MIR-31 (all species)
Seed GGCAAGA
Species Bat starfish (Patiria miniata)
MiRBase ID pmi-mir-31-2
Paralogues Pmi-Mir-31-P4  Pmi-Mir-31-P5a  Pmi-Mir-31-P5b 
Orthologues Aae-Mir-31  Aca-Mir-31  Ami-Mir-31  Asu-Mir-31  Bfl-Mir-31  Bge-Mir-31  Bla-Mir-31  Bpl-Mir-31  Bta-Mir-31  Cbr-Mir-31  Cel-Mir-31  Cfa-Mir-31  Cgi-Mir-31  Cin-Mir-31  Cli-Mir-31  Cmi-Mir-31  Cpi-Mir-31  Cpo-Mir-31  Cte-Mir-31  Dma-Mir-31  Dno-Mir-31  Dpu-Mir-31  Dre-Mir-31  Ebu-Mir-31  Efe-Mir-31  Esc-Mir-31  Ete-Mir-31  Gga-Mir-31  Gmo-Mir-31  Hme-Mir-31  Hsa-Mir-31  Isc-Mir-31  Lch-Mir-31  Lgi-Mir-31  Mal-Mir-31  Mdo-Mir-31  Mml-Mir-31  Mmu-Mir-31  Mun-Mir-31  Npo-Mir-31  Oan-Mir-31  Obi-Mir-31  Ocu-Mir-31  Ovu-Mir-31  Pbv-Mir-31  Pfl-Mir-31  Rno-Mir-31  Sha-Mir-31  Sko-Mir-31  Spt-Mir-31  Spu-Mir-31  Sto-Mir-31  Tca-Mir-31  Tgu-Mir-31  Tni-Mir-31  Xbo-Mir-31  Xtr-Mir-31 
Node of Origin (locus) P. miniata
Node of Origin (family) Bilateria
Genome context
(Pmin1)
JH770732.1: 21164-21227 [+]
Clustered miRNAs
(< 50kb from Mir-31-P3)
Mir-31-P3 JH770732.1: 21164-21227 [+]
Mir-31-P4 JH770732.1: 21556-21616 [+]
Mir-31-P5a JH770732.1: 22547-22607 [+]
Mir-31-P5b JH770732.1: 22547-22607 [+]
Precursor
(pre-Mir +30nt flank)
UUUCUCCAUUGAUACUUUUGAGUGCCGAAGAGGCAAGAUGUUGGCAUAGCUGUGUCCAACGACAUAUUUUCAGCUGUGCCUACAUACUGCCAUUUUGUCACUUGUAAAUGCCUUCAGGAGGAAC
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Structure
        10          20        30        40        50        60 
UUUCUCCAUUGAUACUUUU--|    C     A    AG    U          UGUCCAAC 
                     GAGUG CGAAG GGCA  AUGU GGCAUAGCUG        G
                     UUCAC GUUUU CCGU  UACA CCGUGUCGAC        A
CAAGGAGGACUUCCGUAAAUG^    U     A    CA    U          UUUUAUAC 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
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Mature sequence

Pmi-Mir-31-P3_5p

mirBase accessionMIMAT0032147
Sequence
0- AGGCAAGAUGUUGGCAUAGCUG -22
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Star sequence

Pmi-Mir-31-P3_3p*

mirBase accessionNone
Sequence
42- GCUGUGCCUACAUACUGCCAUU -64
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