MirGeneDB 2.1

MirGeneDB ID

Pmi-Mir-2006

Family name MIR-2006 (all species)
Seed AGCACAC
Species Bat starfish (Patiria miniata)
MiRBase ID pmi-mir-2006
Paralogues
Orthologues Pfl-Mir-2006  Sko-Mir-2006  Spu-Mir-2006 
Node of Origin (locus) Ambulacraria
Node of Origin (family) Ambulacraria
Genome context
(Pmin1)
JH777652.1: 43603-43663 [+]
Precursor
(pre-Mir +30nt flank)
AAAUCACGGCCUAUAGCACGUGACAUGUGACAUCGCCACCAGGUGUACUUCAGUUAAAUACCAAAAUCUGAGCACACUUGGUAGCGGUGCCUUAAGUCAUUACAUUACAUCAGGGAUAUGU
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Structure
        10          20        30        40        50        60
AAAUCACGGCCUAUAGCAC--|    A  UGA      C         A  U   UUAAAU 
                     GUGAC UG   CAUCGC ACCAGGUGU CU CAG      A
                     UACUG AU   GUGGCG UGGUUCACA GA GUC      C
UGUAUAGGGACUACAUUACAU^    A  UCC      A         C  -   UAAAAC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Pmi-Mir-2006_5p*

mirBase accessionMIMAT0032179
Sequence
0- CAUCGCCACCAGGUGUACUUCAG -23
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Mature sequence

Pmi-Mir-2006_3p

mirBase accessionMIMAT0032180
Sequence
39- GAGCACACUUGGUAGCGGUGCC -61
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