| MirGeneDB ID | Pfl-Mir-4826 |
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| Family name |
MIR-4826 (all species) |
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| Seed |
AUCCGAU |
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| Species |
Ptychodera (Ptychodera flava) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Sko-Mir-4826
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| Node of Origin (locus) |
Enteropneusta
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| Node of Origin (family) |
Enteropneusta
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Genome context
(Pfl) |
LD343550.1: 44743-44809 [-]
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Precursor
(pre-Mir +30nt flank) |
GAAGACUGAGAUAUGUUUGUUGCUACUGAUCAUCCGAUAACAAGUGUUGGAUAGGGAAUAAUAAUAAGUACGAAUCCAACACUUCCAAUCGGAUCGUCUGUAGUGAUACCGAACAUCUGUAGAAUUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GAAGACUGAGAUAUGUU--| UG U C AAC AGGGAAUAAU
UGU CUAC GAU AUCCGAU AAGUGUUGGAU \
AUA GAUG CUG UAGGCUA UUCACAACCUA A
GUUAAGAUGUCUACAAGCC^ GU U C ACC AGCAUGAAUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut + on the 3p arm. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
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| Mature sequence |
Pfl-Mir-4826_5p |
| mirBase accession | None |
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| Sequence |
0- CAUCCGAUAACAAGUGUUGGAU -22
Get sequence
|
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| Star sequence |
Pfl-Mir-4826_3p* |
| mirBase accession | None |
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| Sequence |
45- CCAACACUUCCAAUCGGAUCGU -67
Get sequence
|
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