MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-92-P2a

Family name MIR-92 (all species)
Seed AUUGCAC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-367
Paralogues Ocu-Mir-92-P1a  Ocu-Mir-92-P1c  Ocu-Mir-92-P1d  Ocu-Mir-92-P2c  Ocu-Mir-92-P2d 
Orthologues Aca-Mir-92-P2a  Ami-Mir-92-P2a  Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2a  Cel-Mir-92  Cfa-Mir-92-P2a  Cli-Mir-92-P2a  Cmi-Mir-92-P2a  Cpi-Mir-92-P2a  Cpo-Mir-92-P2a  Dno-Mir-92-P2a  Esc-Mir-92  Ete-Mir-92-P2a  Gga-Mir-92-P2a  Gja-Mir-92-P2a  Hsa-Mir-92-P2a  Isc-Mir-92  Mdo-Mir-92-P2a  Mml-Mir-92-P2a  Mmu-Mir-92-P2a  Mun-Mir-92-P2a  Oan-Mir-92-P2a  Obi-Mir-92  Rno-Mir-92-P2a  Sha-Mir-92-P2a  Sme-Mir-92  Spt-Mir-92-P2a  Sto-Mir-92-P2a  Tgu-Mir-92-P2a  Xla-Mir-92-P2a  Xtr-Mir-92-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(oryCun2_add)
chr15: 36770238-36770297 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P2a)
Mir-430-P1 chr15: 36769637-36769702 [+] UCSC Ensembl
Mir-430-P2 chr15: 36769775-36769834 [+] UCSC Ensembl
Mir-430-P3 chr15: 36769951-36770011 [+] UCSC Ensembl
Mir-430-P4 chr15: 36770114-36770174 [+] UCSC Ensembl
Mir-92-P2a chr15: 36770238-36770297 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUGUGUGUAGAUCCUGGUUACAUGCCAUUACUGUUGCUAAUAUGCAACUCUGUUGAAUAUAUAUUGGAAUUGCACUUUAGCAAUGGUGAUGGAAUGUUUUCAAAGGCUAAUGAAAGAGA
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Structure
        10        20          30        40        50         
AUUGUGUGUAGAUCCUGGUU--|   G                UA     C   GUUGAA 
                      ACAU CCAUUACUGUUGCUAA  UGCAA UCU      U
                      UGUA GGUAGUGGUAACGAUU  ACGUU AGG      A
AGAGAAAGUAAUCGGAAACUUU^   A                UC     A   UUAUAU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-92-P2a_5p* (predicted)

mirBase accessionMIMAT0036324
Sequence
0- ACUGUUGCUAAUAUGCAACUCU -22
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Mature sequence

Ocu-Mir-92-P2a_3p (predicted)

mirBase accessionMIMAT0036325
Sequence
38- AAUUGCACUUUAGCAAUGGUGA -60
Get sequence