MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-92-P1c

Family name MIR-92 (all species)
Seed AUUGCAC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-92a-2
Paralogues Ocu-Mir-92-P1a  Ocu-Mir-92-P1d  Ocu-Mir-92-P2a  Ocu-Mir-92-P2c  Ocu-Mir-92-P2d 
Orthologues Aca-Mir-92-P1c  Ami-Mir-92-P1c  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1c  Cel-Mir-92  Cfa-Mir-92-P1c  Cli-Mir-92-P1c  Cmi-Mir-92-P1c  Cpi-Mir-92-P1c  Cpo-Mir-92-P1c  Dno-Mir-92-P1c  Esc-Mir-92  Ete-Mir-92-P1c  Gga-Mir-92-P1c  Gja-Mir-92-P1c  Hsa-Mir-92-P1c  Isc-Mir-92  Mdo-Mir-92-P1c  Mml-Mir-92-P1c  Mmu-Mir-92-P1c  Mun-Mir-92-P1c  Oan-Mir-92-P1c  Obi-Mir-92  Pbv-Mir-92-P1c  Rno-Mir-92-P1c  Sha-Mir-92-P1c  Sme-Mir-92  Spt-Mir-92-P1c  Sto-Mir-92-P1c  Tgu-Mir-92-P1c  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xtr-Mir-92-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(oryCun2_add)
chrX: 108518367-108518428 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1c)
Mir-92-P2c chrX: 108518210-108518274 [-] UCSC Ensembl
Mir-92-P1c chrX: 108518367-108518428 [-] UCSC Ensembl
Mir-19-P2c chrX: 108518503-108518568 [-] UCSC Ensembl
Mir-17-P4c chrX: 108518632-108518692 [-] UCSC Ensembl
Mir-17-P2c chrX: 108518869-108518933 [-] UCSC Ensembl
Mir-17-P1c chrX: 108519035-108519093 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAUACCAGCAUUCAAGCCCAUUCAUCCGCUGGUGGGGAUUUGUCGCAUUACUUGUGUUCUAUGGUAAAGUAUUGCACUUGUCCCGGCCUGUGGAGGAAAGGAGGAUUUGAUCGUCGUCUUA
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Structure
        10          20        30        40        50        60 
ACAUACCAGCAUUCAAGC--| A   A     U   G     UU  C   U    UGUGUUC 
                    CC UUC UCCGC GGU GGGAU  GU GCA UACU       \
                    GG AAG AGGUG CCG CCCUG  CA CGU AUGA       U
AUUCUGCUGCUAGUUUAGGA^ A   G     U   G     UU  -   U    AAUGGUA 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-92-P1c_5p*

mirBase accessionMIMAT0048175
Sequence
0- UGGUGGGGAUUUGUCGCAUUACU -23
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Mature sequence

Ocu-Mir-92-P1c_3p

mirBase accessionMIMAT0048174
Sequence
40- UAUUGCACUUGUCCCGGCCUGU -62
Get sequence