MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-876

Family name MIR-876 (all species)
Seed GGUGGUU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-876  Cfa-Mir-876  Cpo-Mir-876  Dno-Mir-876  Ete-Mir-876  Hsa-Mir-876  Mml-Mir-876  Rno-Mir-876 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chr1: 24482714-24482772 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-876)
Mir-873-v1 chr1: 24466640-24466698 [+] UCSC Ensembl
Mir-873-v2 chr1: 24466641-24466697 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGCUUUACACAAACUGUGGAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAU
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Structure
        10          20        30        40        50         
GAAGCUUUACACAAACU--|     UG         U                AUCUAAG 
                   GUGGAG  CUGUGGAUU CUUUGUGAAUCACCAU       \
                   CACUUC  GAUACUUAA GAAACAUUUGGUGGUG       C
UAGUUGACGUCUUCGUGGA^     GU         U                GUGUAAU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-876_5p*

mirBase accessionNone
Sequence
0- GAUUUCUUUGUGAAUCACCAUA -22
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Mature sequence

Ocu-Mir-876_3p

mirBase accessionNone
Sequence
37- UGGUGGUUUACAAAGUAAUUCA -59
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