| MirGeneDB ID | Ocu-Mir-628 |
|---|
| Family name |
MIR-628 (all species) |
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| Seed |
UGCUGAC |
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| Species |
Rabbit (Oryctolagus cuniculus) |
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| MiRBase ID |
ocu-mir-628
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-628
Cfa-Mir-628
Dno-Mir-628
Ete-Mir-628
Hsa-Mir-628
Mml-Mir-628
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(oryCun2_add) |
chr17: 17179502-17179562 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AAUGGGACAUAGCUAUUGUGUCACUUCCUCAUGCUGACAUAUUUACUAGAAGGUAAAAUUCAUAACCUUCUAGUAAGAGUGGCAGUUGAAGGGAAGGGCUCAUCUGACUUCUGGAAACUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAUGGGACAUAGCUAUU---|U A CAU- A A UAAAA
G GUC CUUCCU GCUG CAU UUUACUAGAAGG U
C CGG GAAGGG UGAC GUG GAAUGAUCUUCC U
UGUCAAAGGUCUUCAGUCUA^U - AAGU G A AAUAC
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ocu-Mir-628_5p |
| mirBase accession | MIMAT0048539 |
|---|
| Sequence |
0- AUGCUGACAUAUUUACUAGAAGG -23
Get sequence
|
|---|
| Star sequence |
Ocu-Mir-628_3p* |
| mirBase accession | MIMAT0048540 |
|---|
| Sequence |
38- UCUAGUAAGAGUGGCAGUUGAAG -61
Get sequence
|
|---|
