MirGeneDB 2.1
MirGeneDB ID

Ocu-Mir-542-v1

Family name MIR-542 (all species)
Seed GUGACAG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-542
Paralogues Ocu-Mir-542-v2 
Orthologues Bta-Mir-542  Cfa-Mir-542-v1  Cpo-Mir-542  Dno-Mir-542-v1  Ete-Mir-542  Hsa-Mir-542-v1  Mml-Mir-542-v1  Mmu-Mir-542 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 chrX: 108850875-108850933 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-542-v1)		 Mir-450-P3 chrX: 108850008-108850065 [-] UCSC Ensembl
Mir-450-P2 chrX: 108850173-108850229 [-] UCSC Ensembl
Mir-450-P1 chrX: 108850343-108850399 [-] UCSC Ensembl
Mir-542-v1 chrX: 108850875-108850933 [-] UCSC Ensembl
Mir-542-v2 chrX: 108850876-108850932 [-] UCSC Ensembl
Mir-12092 chrX: 108854560-108854616 [-] UCSC Ensembl
Mir-15-P2c chrX: 108855773-108855835 [-] UCSC Ensembl
Mir-15-P1c chrX: 108856105-108856163 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGCUCAUGGGUGCACAGGCCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCACUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCACUCGUCUCCACAGCCUU
Get precursor sequence
Structure
        10         20         30        40        50         
AGGCUCAUGGGUGCACA-   -|      AUC    GG    UCA         AUACCA 
                  GGC CUCAGAC   UCGG  AUCA   UGUCACGAG      \
                  CCG GGGUCUG   AGUC  UAGU   ACAGUGUUC      C
UUCCGACACCUCUGCUCA   A^      GAA    AA    UAG         ACGUGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
He Ki Te To Wh
Star sequence

Ocu-Mir-542-v1_5p*
mirBase accessionMIMAT0048525
Sequence 
0- UCGGGGAUCAUCAUGUCACGAG -22
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Mature sequence

Ocu-Mir-542-v1_3p
mirBase accessionMIMAT0048526
Sequence 
37- UGUGACAGAUUGAUAACUGAAA -59
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