| MirGeneDB ID | Ocu-Mir-483 |
|---|
| Family name |
MIR-483 (all species) |
|---|
| Seed |
AGACGGG |
|---|
| Species |
Rabbit (Oryctolagus cuniculus) |
|---|
| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-483-v1
Bta-Mir-483-v2
Cfa-Mir-483
Cpo-Mir-483
Dno-Mir-483
Ete-Mir-483
Hsa-Mir-483
Mml-Mir-483
Mmu-Mir-483
Rno-Mir-483
Sha-Mir-483
|
|---|
| Node of Origin (locus) |
Theria
|
|---|
| Node of Origin (family) |
Theria
|
|---|
Genome context
(oryCun2_add) |
1987813688: 50-110 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CGAGCGUGCAGUGCCGUGGGGGAGAGGGGGAAGACGGGAGAAGAGAAGAGAGUGGCUUCAUGGUCUCCUCACUCCUCCCCUCCCGUCUUGUCUUCUCCUGCCCUGUCCUCUCUGUGAAUCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGAGCGUGCAGUGCCGU- --| G A AA A A UGGCUUC
GGG GGAGAGGG GA GACGGGAG GAG AG GAG \
CCC CCUCUUCU UU CUGCCCUC CUC UC CUC A
CCUAAGUGUCUCUCCUGU GU^ G - CC C A CUCUGGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Not in assembly but in trace archive. |
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| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Ocu-Mir-483_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AAGACGGGAGAAGAGAAGAGAG -22
Get sequence
|
|---|
| Co-mature sequence |
Ocu-Mir-483_3p |
| mirBase accession | None |
|---|
| Sequence |
39- CACUCCUCCCCUCCCGUCUUGU -61
Get sequence
|
|---|
