MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-362-P4

Family name MIR-362 (all species)
Seed AUGCACC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-502a
Paralogues Ocu-Mir-362-P1  Ocu-Mir-362-P2  Ocu-Mir-362-P3  Ocu-Mir-362-P6 
Orthologues Bta-Mir-362-P4  Cfa-Mir-362-P4  Cpo-Mir-362-P4  Dno-Mir-362-P4  Ete-Mir-362-P4  Hsa-Mir-362-P4  Mml-Mir-362-P4  Mmu-Mir-362-P4  Rno-Mir-362-P4 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrX: 34243943-34244001 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-362-P4)
Mir-188-P2 chrX: 34232287-34232345 [+] UCSC Ensembl
Mir-188-P1 chrX: 34232654-34232713 [+] UCSC Ensembl
Mir-362-P6 chrX: 34235397-34235456 [+] UCSC Ensembl
Mir-362-P2 chrX: 34237519-34237579 [+] UCSC Ensembl
Mir-362-P1 chrX: 34238027-34238085 [+] UCSC Ensembl
Mir-362-P3 chrX: 34238810-34238868 [+] UCSC Ensembl
Mir-188-P3 chrX: 34242048-34242106 [+] UCSC Ensembl
Mir-362-P4 chrX: 34243943-34244001 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUGAGCCUUCUGCUCUGCUCCCCCUCUCUAAUCCUUGCUAUCUGGGUGCUAGUGCUAUCUCAAUGCAAUGCACCUGGGCAAGGAUUCAGAGAGGGUGAGCUUGACUGCAUCAAGAAGG
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Structure
        10         20        30         40        50        60 
CCUGAGCCUUCUGCUCU-    C        -|        UAU UG     UAG   UAUC 
                  GCUC CCCUCUCU AAUCCUUGC   C  GGUGC   UGC    \
                  CGAG GGGAGAGA UUAGGAACG   G  CCACG   ACG    U
GGAAGAACUACGUCAGUU    U        C^        --- GU     UA-   UAAC 
       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-362-P4_5p*

mirBase accessionMIMAT0048495
Sequence
0- AAUCCUUGCUAUCUGGGUGCUAGUGC -26
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Mature sequence

Ocu-Mir-362-P4_3p

mirBase accessionMIMAT0048496
Sequence
37- AAUGCACCUGGGCAAGGAUUCA -59
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