MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-34-P3b

Family name MIR-34 (all species)
Seed GGCAGUG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-449b
Paralogues Ocu-Mir-34-P1  Ocu-Mir-34-P2a  Ocu-Mir-34-P2b  Ocu-Mir-34-P3a  Ocu-Mir-34-P3c 
Orthologues Aae-Mir-34  Ami-Mir-34-P3b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3b  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3b  Cmi-Mir-34-P3b  Cpi-Mir-34-P3b  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3b  Gga-Mir-34-P3b  Gja-Mir-34-P3b  Hsa-Mir-34-P3b  Isc-Mir-34  Lch-Mir-34-P3b  Lgi-Mir-34  Loc-Mir-34-P3b  Mdo-Mir-34-P3b  Mml-Mir-34-P3b  Mmu-Mir-34-P3b  Npo-Mir-34  Oan-Mir-34-P3b  Obi-Mir-34  Ovu-Mir-34  Pbv-Mir-34-P3b  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3b  Sha-Mir-34-P3b  Sko-Mir-34  Spt-Mir-34-P3b  Spu-Mir-34  Sto-Mir-34-P3b  Tca-Mir-34  Xbo-Mir-34  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xtr-Mir-34-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(oryCun2_add)
chr11: 71142387-71142447 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3b)
Mir-34-P3c chr11: 71142265-71142326 [-] UCSC Ensembl
Mir-34-P3b chr11: 71142387-71142447 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUGCAGCGGGGCAAUGACCUGAAGCAGGUAGGCAGUGUAAUGUUAGUUGGCUGCUUUGGGUCAAGUCAGCAGCCACAGGUACGCUGCCACUUGCCUCUGGCUAAAUUGCUCUUGCUCAUG
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Structure
        10          20        30        40         50        60  
GGUGCAGCGGGGCAAUGA--| U  A      A         A-   UAGUU       UUGGG 
                    CC GA GCAGGU GGCAGUGUA  UGU     GGCUGCU     U
                    GG CU CGUUCA CCGUCGCAU  ACA     CCGACGA     C
GUACUCGUUCUCGUUAAAUC^ U  C      -         GG   -----       CUGAA 
 .       110       100        90         80             70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Mir-34-P3b_5p

mirBase accessionMIMAT0048455
Sequence
0- AGGCAGUGUAAUGUUAGUUGGCUGCU -26
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Star sequence

Ocu-Mir-34-P3b_3p* (predicted)

mirBase accessionMIMAT0048456
Sequence
40- CAGCCACAGGUACGCUGCCAC -61
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