MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-3085

Family name MIR-3085 (all species)
Seed CUGGCUG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-3085
Paralogues
Orthologues Bta-Mir-3085  Cfa-Mir-3085  Cpo-Mir-3085  Dno-Mir-3085  Ete-Mir-3085  Hsa-Mir-3085  Mml-Mir-3085  Mmu-Mir-3085  Rno-Mir-3085 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chr18: 46016820-46016879 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGACAGAGCCAGGCCGCCCUGCCCUGGGAAGGUGCCAUUCCGAGGGCCAGGGUCUGAUUUUGUGUUGCUCUGGCUGCUAUGGCCCCUCCCAGGGCCUGGGCAUCACCCCCAGACAAGUG
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Structure
        10          20         30        40        50        60 
CCGACAGAGCCAGGCCG--   U-|        A  U     UCCGAG         CUGAUU 
                   CCC  GCCCUGGGA GG GCCAU      GGCCAGGGU      \
                   GGG  CGGGACCCU CC CGGUA      UCGGUCUCG      U
GUGAACAGACCCCCACUAC   UC^        C  -     UCG---         UUGUGU 
.       110       100        90         80           70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-3085_5p* (predicted)

mirBase accessionMIMAT0048609
Sequence
0- AGGUGCCAUUCCGAGGGCCAGGGU -24
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Mature sequence

Ocu-Mir-3085_3p

mirBase accessionMIMAT0048610
Sequence
39- UCUGGCUGCUAUGGCCCCUCC -60
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