MirGeneDB 2.1
MirGeneDB ID

Ocu-Mir-28-P1

Family name MIR-28 (all species)
Seed ACUAGAU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-28
Paralogues Ocu-Mir-28-P2  Ocu-Mir-28-P3 
Orthologues Bta-Mir-28-P1  Cfa-Mir-28-P1  Cpo-Mir-28-P1  Dno-Mir-28-P1  Ete-Mir-28-P1  Hsa-Mir-28-P1  Mml-Mir-28-P1  Mmu-Mir-28-P1  Rno-Mir-28-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 chr14: 84299170-84299231 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAAGAAUAAAAAAUUGGUCCUUGCCCCCAAGGAGCUCACAGUCUAUUGAGUUGCCAUUCUGACUUCCCCACUAGAUUAUGAGCUCCUGGAGGGCAGGCACUUUUAUUCAUCUGAAAUAGA
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Structure
        10          20         30        40        50        60
AGAAAGAAUAAAAAAUU--   C       -|  A        C      U  AGUUGCCAU 
                   GGU CUUGCCC CCA GGAGCUCA AGUCUA UG         U
                   UCA GGACGGG GGU CCUCGAGU UUAGAU AC         C
AGAUAAAGUCUACUUAUUU   C       A^  -        A      C  CCCUUCAGU 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
He Ki Te To Wh
Star sequence

Ocu-Mir-28-P1_5p*
mirBase accessionMIMAT0048141
Sequence 
0- AAGGAGCUCACAGUCUAUUGAG -22
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Mature sequence

Ocu-Mir-28-P1_3p
mirBase accessionMIMAT0048142
Sequence 
40- CACUAGAUUAUGAGCUCCUGGA -62
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