MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-154-P22

Family name MIR-154 (all species)
Seed AACAUUC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID
Paralogues Ocu-Mir-154-P1  Ocu-Mir-154-P2-v1  Ocu-Mir-154-P2-v2  Ocu-Mir-154-P3a-v1  Ocu-Mir-154-P3a-v2  Ocu-Mir-154-P4-o1  Ocu-Mir-154-P5  Ocu-Mir-154-P6  Ocu-Mir-154-P7  Ocu-Mir-154-P9  Ocu-Mir-154-P10  Ocu-Mir-154-P12  Ocu-Mir-154-P13  Ocu-Mir-154-P15  Ocu-Mir-154-P16  Ocu-Mir-154-P17  Ocu-Mir-154-P19  Ocu-Mir-154-P20-v1  Ocu-Mir-154-P20-v2  Ocu-Mir-154-P21  Ocu-Mir-154-P23  Ocu-Mir-154-P24  Ocu-Mir-154-P25  Ocu-Mir-154-P26  Ocu-Mir-154-P27  Ocu-Mir-154-P30  Ocu-Mir-154-P36 
Orthologues Bta-Mir-154-P22  Cfa-Mir-154-P22  Cpo-Mir-154-P22  Dno-Mir-154-P22  Ete-Mir-154-P22  Hsa-Mir-154-P22  Mml-Mir-154-P22  Mmu-Mir-154-P22  Rno-Mir-154-P22 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
2043804821: 509-567 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACGGAUGGCGCUGACGUGCGGUGCUUAAUGAGAAGUCGCCCGUGUUUUUUUCGCUGUAUUUGUGACGAAACAUUCGCGGUGCACUUCUUUUUCAGUAUCCUACUCUGCCUCGGCGACGU
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Structure
        10         20        30         40           50       
ACGGAUGGCGCUGACGUGC-      U  U       -    -  --|     UUUCGCUG 
                    GGUGCU AA GAGAAGU CGCC CG  UGUUUU        U
                    CUAUGA UU UUCUUCA GUGG GC  ACAAAG        A
UGCAGCGGCUCCGUCUCAUC      C  U       C    C  UU^     CAGUGUUU 
       110       100        90        80        70        60
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-154-P22_5p*

mirBase accessionNone
Sequence
0- AGAAGUCGCCCGUGUUUUUUU -21
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Mature sequence

Ocu-Mir-154-P22_3p

mirBase accessionNone
Sequence
37- AAACAUUCGCGGUGCACUUCUU -59
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