MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-154-P20-v1

Family name MIR-154 (all species)
Seed GAGUAUU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-496
Paralogues Ocu-Mir-154-P1  Ocu-Mir-154-P2-v1  Ocu-Mir-154-P2-v2  Ocu-Mir-154-P3a-v1  Ocu-Mir-154-P3a-v2  Ocu-Mir-154-P4-o1  Ocu-Mir-154-P5  Ocu-Mir-154-P6  Ocu-Mir-154-P7  Ocu-Mir-154-P9  Ocu-Mir-154-P10  Ocu-Mir-154-P12  Ocu-Mir-154-P13  Ocu-Mir-154-P15  Ocu-Mir-154-P16  Ocu-Mir-154-P17  Ocu-Mir-154-P19  Ocu-Mir-154-P20-v2  Ocu-Mir-154-P21  Ocu-Mir-154-P22  Ocu-Mir-154-P23  Ocu-Mir-154-P24  Ocu-Mir-154-P25  Ocu-Mir-154-P26  Ocu-Mir-154-P27  Ocu-Mir-154-P30  Ocu-Mir-154-P36 
Orthologues Bta-Mir-154-P20  Cfa-Mir-154-P20  Cpo-Mir-154-P20-v1  Cpo-Mir-154-P20-v2  Dno-Mir-154-P20-v1  Dno-Mir-154-P20-v2  Ete-Mir-154-P20-v1  Ete-Mir-154-P20-v2  Hsa-Mir-154-P20-v1  Hsa-Mir-154-P20-v2  Mml-Mir-154-P20-v1  Mml-Mir-154-P20-v2  Mmu-Mir-154-P20-v1  Mmu-Mir-154-P20-v2  Rno-Mir-154-P20-v1  Rno-Mir-154-P20-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrUn0352: 149012-149065 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P20-v1)
Mir-154-P7 chrUn0352: 121687-121745 [+] UCSC Ensembl
Mir-154-P13 chrUn0352: 122887-122942 [+] UCSC Ensembl
Mir-154-P2-v1 chrUn0352: 123314-123368 [+] UCSC Ensembl
Mir-154-P2-v2 chrUn0352: 123315-123367 [+] UCSC Ensembl
Mir-154-P30 chrUn0352: 124893-124948 [+] UCSC Ensembl
Mir-154-P3a-v2 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P3a-v1 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P26 chrUn0352: 125317-125376 [+] UCSC Ensembl
Mir-154-P19 chrUn0352: 130083-130140 [+] UCSC Ensembl
Mir-376-P4 chrUn0352: 132903-132959 [+] UCSC Ensembl
Mir-376-P3 chrUn0352: 133217-133274 [+] UCSC Ensembl
Mir-154-P23 chrUn0352: 133369-133421 [+] UCSC Ensembl
Mir-376-P2 chrUn0352: 133511-133568 [+] UCSC Ensembl
Mir-376-P1 chrUn0352: 133845-133902 [+] UCSC Ensembl
Mir-154-P9 chrUn0352: 136582-136644 [+] UCSC Ensembl
Mir-154-P17 chrUn0352: 137030-137087 [+] UCSC Ensembl
Mir-154-P21 chrUn0352: 137513-137576 [+] UCSC Ensembl
Mir-154-P27 chrUn0352: 138028-138086 [+] UCSC Ensembl
Mir-154-P24 chrUn0352: 139340-139398 [+] UCSC Ensembl
Mir-154-P16 chrUn0352: 141248-141305 [+] UCSC Ensembl
Mir-154-P10 chrUn0352: 142718-142775 [+] UCSC Ensembl
Mir-134 chrUn0352: 143048-143107 [+] UCSC Ensembl
Mir-154-P15 chrUn0352: 143743-143801 [+] UCSC Ensembl
Mir-154-P1 chrUn0352: 147896-147953 [+] UCSC Ensembl
Mir-154-P20-v2 chrUn0352: 149011-149066 [+] UCSC Ensembl
Mir-154-P20-v1 chrUn0352: 149012-149065 [+] UCSC Ensembl
Mir-154-P6 chrUn0352: 150228-150287 [+] UCSC Ensembl
Mir-541 chrUn0352: 152092-152157 [+] UCSC Ensembl
Mir-154-P5 chrUn0352: 152953-153008 [+] UCSC Ensembl
Mir-154-P12 chrUn0352: 153189-153244 [+] UCSC Ensembl
Mir-154-P25 chrUn0352: 153728-153783 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGAGCACCCUAGUCAGGUACUUGAAUGGAGGUUGUCCAUGGUGUGUUCAUUUUAUUUAUGAUGAGUAUUACAUGGCCAAUCUCCUUUCGGUACUAAGUUCUUCUUGGGGAGGC
Get precursor sequence
Structure
        10           20        30        40        50      
GGGAGCACCCUAGUCAG---|    U   U        U     GU         UUA 
                    GUACU GAA GGAGGUUG CCAUG  GUGUUCAUU   U
                    CAUGG CUU CCUCUAAC GGUAC  UAUGAGUAG   U
CGGAGGGGUUCUUCUUGAAU^    -   U        C     AU         UAU 
  110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-154-P20-v1_5p*

mirBase accessionMIMAT0048485
Sequence
0- GGUUGUCCAUGGUGUGUUCAUU -22
Get sequence
Mature sequence

Ocu-Mir-154-P20-v1_3p

mirBase accessionMIMAT0048486
Sequence
32- UGAGUAUUACAUGGCCAAUCUC -54
Get sequence