MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-149

Family name MIR-149 (all species)
Seed CUGGCUC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-149  Cfa-Mir-149  Cpo-Mir-149  Dno-Mir-149  Ete-Mir-149  Hsa-Mir-149  Mml-Mir-149  Mmu-Mir-149  Rno-Mir-149 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
1995685930: 194-255 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCCGGGGCCCUCGGGCCAGCGCCCAGGCUCUGGCUCCGUGUCUUCACUCCCGUGUUUGUCCGAGGAGGGAGGGAGGGACGGGGGCUGUGCUGGGGCCGCUGGAAUAGCACAGGCCGCCGG
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Structure
        10         20         30         40        50        60 
UGCCCGGGGCCCUCGGG-     -|   A   UCU      -  G     A     GUGUUUG 
                  CCAGC GCCC GGC   GGCUCC GU UCUUC CUCCC       \
                  GGUCG CGGG UCG   UCGGGG CA GGAGG GAGGG       U
GGCCGCCGGACACGAUAA     C^   G   UG-      G  G     -     AGGAGCC 
120       110       100        90         80         70
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Mir-149_5p

mirBase accessionNone
Sequence
0- UCUGGCUCCGUGUCUUCACUCCC -23
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Star sequence

Ocu-Mir-149_3p*

mirBase accessionNone
Sequence
40- GAGGGAGGGACGGGGGCUGUGC -62
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