MirGeneDB 2.1
MirGeneDB ID

Ocu-Mir-136-v2

Family name MIR-136 (all species)
Seed UCAUCGU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-136
Paralogues Ocu-Mir-136-v1 
Orthologues Bta-Mir-136-v2  Cfa-Mir-136-v2  Cpo-Mir-136-v2  Dno-Mir-136-v2  Ete-Mir-136-v2  Hsa-Mir-136-v2  Mml-Mir-136-v2  Mmu-Mir-136-v2  Rno-Mir-136-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 chrUn0352: 10072-10127 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-136-v2)		 Mir-337-v1 chrUn0352: 1562-1622 [+] UCSC Ensembl
Mir-337-v2 chrUn0352: 1562-1622 [+] UCSC Ensembl
Mir-433 chrUn0352: 6784-6857 [+] UCSC Ensembl
Mir-127 chrUn0352: 7903-7958 [+] UCSC Ensembl
Mir-432 chrUn0352: 9852-9920 [+] UCSC Ensembl
Mir-136-v1 chrUn0352: 10072-10127 [+] UCSC Ensembl
Mir-136-v2 chrUn0352: 10072-10127 [+] UCSC Ensembl
Mir-370 chrUn0352: 31816-31871 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAUGGUGGUCUUGGAUGAGCCCUCGGAGGACUCCAUUUGUUUUGAUGAUGGAUUCUUAGGCUCCAUCAUCGUCUCAAAUGAGUCUUCAGAGGGUUCUAUCUUGUCGUCGGCGGGA
Get precursor sequence
Structure
        10          20        30        40        50        
CCAUGGUGGUCUUGGAU--|       G        C     UUU         AUUCU 
                   GAGCCCUC GAGGACUC AUUUG   UGAUGAUGG     \
                   CUUGGGAG CUUCUGAG UAAAC   GCUACUACC     U
AGGGCGGCUGCUGUUCUAU^       A        -     UCU         UCGGA 
    110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
He Ki Te To Wh
Star sequence

Ocu-Mir-136-v2_5p*
mirBase accessionMIMAT0048232
Sequence 
0- ACUCCAUUUGUUUUGAUGAUGG -22
Get sequence
Mature sequence

Ocu-Mir-136-v2_3p
mirBase accessionMIMAT0048233
Sequence 
35- AUCAUCGUCUCAAAUGAGUCU -56
Get sequence