| MirGeneDB ID | Ocu-Mir-1343 |
|---|
| Family name |
MIR-1343 (all species) |
|---|
| Seed |
UCCUGGG |
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| Species |
Rabbit (Oryctolagus cuniculus) |
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| MiRBase ID |
ocu-mir-1343
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-1343
Cfa-Mir-1343
Cpo-Mir-1343
Dno-Mir-1343
Hsa-Mir-1343
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
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Genome context
(oryCun2_add) |
chr1: 174235151-174235209 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGAACAGGACGAUGAUGCUGGCAUCGGUGCUGGGGAGCGGCCCCCGGGCGGGCCUCUGCUCUGGCCCCUCCUGGGGCCCGCACUCUCGUUCCGGGCCCGCUCCACCUCCAUCUCUGACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGAACAGGACGAUGAUGCU---| A U U A C C CCUCUG
GGC UCGG GC GGGG GCGG CCCCGGG GGG \
CCG GGCC UG UCUC CGCC GGGGUCC CCC C
ACAGUCUCUACCUCCACCUCGC^ - U C A C U CGGUCU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ocu-Mir-1343_5p* |
| mirBase accession | MIMAT0048599 |
|---|
| Sequence |
0- UGGGGAGCGGCCCCCGGGCGGG -22
Get sequence
|
|---|
| Mature sequence |
Ocu-Mir-1343_3p |
| mirBase accession | MIMAT0048600 |
|---|
| Sequence |
37- CUCCUGGGGCCCGCACUCUCGU -59
Get sequence
|
|---|
