MirGeneDB 2.1

MirGeneDB ID

Ocu-Let-7-P2b3

Family name LET-7 (all species)
Seed GAGGUAG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-98
Paralogues Ocu-Let-7-P1b  Ocu-Let-7-P1c  Ocu-Let-7-P1d  Ocu-Let-7-P2a1  Ocu-Let-7-P2a2  Ocu-Let-7-P2a3  Ocu-Let-7-P2b1  Ocu-Let-7-P2b2  Ocu-Let-7-P2c1  Ocu-Let-7-P2c2  Ocu-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2b3  Ami-Let-7-P2b3  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2b3  Cfa-Let-7-P2b3  Cgi-Let-7  Cpi-Let-7-P2b3  Cpo-Let-7-P2b3  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2b3  Dpu-Let-7  Dre-Let-7-P2b3a  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2b3  Gja-Let-7-P2b3  Gmo-Let-7-P2b3a  Gmo-Let-7-P2b3b  Hme-Let-7  Hsa-Let-7-P2b3  Isc-Let-7  Lan-Let-7  Lgi-Let-7  Loc-Let-7-P2b3  Mal-Let-7-P2b3a  Mml-Let-7-P2b3  Mmu-Let-7-P2b3  Mun-Let-7-P2b3  Npo-Let-7  Oan-Let-7-P2b3  Obi-Let-7  Ovu-Let-7  Pbv-Let-7-P2b3  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2b3  Sko-Let-7  Spt-Let-7-P2b3  Spu-Let-7  Sto-Let-7-P2b3  Tca-Let-7  Tni-Let-7-P2b3a  Tni-Let-7-P2b3b  Xbo-Let-7  Xla-Let-7-P2b3c  Xla-Let-7-P2b3d  Xtr-Let-7-P2b3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(oryCun2_add)
chrX: 35039089-35039167 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2b3)
Let-7-P2b3 chrX: 35039089-35039167 [-] UCSC Ensembl
Let-7-P2a3 chrX: 35040026-35040096 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUUGCUGGAUGACUCUGCUCAUGCCGGGGUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUUUUAGGCCCCAAUAAGAAGAUAACUAUACAACUUACUACUUUCCCUGAUGUGUGGCAUGUUCACACUCUUGGCA
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Structure
        10         20         30        40        50        60         
CCUUGCUGGAUGACUCU-   -|  GC     U                 U   GUGGGGUAGGGAUUUU 
                  GCU CAU  CGGGG GAGGUAGUAAGUUGUAU GUU                A
                  CGG GUG  GUCCC UUUCAUCAUUCAACAUA CAA                G
ACGGUUCUCACACUUGUA   U^  UA     -                 U   UAGAAGAAUAACCCCG 
       130       120       110        100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Let-7-P2b3_5p

mirBase accessionMIMAT0048180
Sequence
0- UGAGGUAGUAAGUUGUAUUGUU -22
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Star sequence

Ocu-Let-7-P2b3_3p*

mirBase accessionMIMAT0048181
Sequence
58- CUAUACAACUUACUACUUUCC -79
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