MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-430-P54

Family name MIR-430 (all species)
Seed AAGUGCC
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-1420b
Paralogues Oan-Mir-430-P1  Oan-Mir-430-P2  Oan-Mir-430-P3  Oan-Mir-430-P4  Oan-Mir-430-P53  Oan-Mir-430-P55  Oan-Mir-430-P56  Oan-Mir-430-P57  Oan-Mir-430-P58  Oan-Mir-430-P59  Oan-Mir-430-P60  Oan-Mir-430-P61 
Orthologues
Node of Origin (locus) O. anatinus
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041737.1: 54187300-54187360 [+]
Clustered miRNAs
(< 50kb from Mir-430-P54)
Mir-430-P53 NC_041737.1: 54187151-54187209 [+]
Mir-430-P54 NC_041737.1: 54187300-54187360 [+]
Mir-430-P55 NC_041737.1: 54187861-54187919 [+]
Mir-430-P56 NC_041737.1: 54190035-54190095 [+]
Mir-430-P57 NC_041737.1: 54190187-54190244 [+]
Mir-430-P58 NC_041737.1: 54190481-54190536 [+]
Mir-430-P60 NC_041737.1: 54191452-54191511 [+]
Mir-430-P59 NC_041737.1: 54191591-54191649 [+]
Precursor
(pre-Mir +30nt flank)
AGCGUAUUCACUUUUUGCUCAACUCUGCCUAUCCAAUCUGGGAGCACUCUCCAGUGACUUGAAGAAAGGAAAGUGCCACCUGACUGGAUGAGUUUGGUUGGGAUGAUAUGCCGGAGGUGGG
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Structure
        10          20        30        40        50          
AGCGUAUUCACUUUUUG--|      CU  C      A  U  GA     C   AGUGACU 
                   CUCAACU  GC UAUCCA UC GG  GCACU UCC       \
                   GGGUUGG  UG GUAGGU AG CC  CGUGA AGG       U
GGGUGGAGGCCGUAUAGUA^      UU  A      C  U  AC     A   AAAGAAG 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Oan-Mir-430-P54_5p*

mirBase accessionMIMAT0006924
Sequence
0- AUCCAAUCUGGGAGCACUCUCC -22
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Mature sequence

Oan-Mir-430-P54_3p

mirBase accessionMIMAT0006925
Sequence
39- AAAGUGCCACCUGACUGGAUGA -61
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