MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-1421-P47

Family name MIR-1421 (all species)
Seed GCGUGGA
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-1421e
Paralogues Oan-Mir-1421-P1  Oan-Mir-1421-P2  Oan-Mir-1421-P3  Oan-Mir-1421-P4  Oan-Mir-1421-P5  Oan-Mir-1421-P6  Oan-Mir-1421-P7a  Oan-Mir-1421-P7b  Oan-Mir-1421-P7c  Oan-Mir-1421-P8  Oan-Mir-1421-P9  Oan-Mir-1421-P10  Oan-Mir-1421-P11  Oan-Mir-1421-P12  Oan-Mir-1421-P13a  Oan-Mir-1421-P13b  Oan-Mir-1421-P14  Oan-Mir-1421-P15  Oan-Mir-1421-P16  Oan-Mir-1421-P17  Oan-Mir-1421-P18  Oan-Mir-1421-P19  Oan-Mir-1421-P20  Oan-Mir-1421-P21  Oan-Mir-1421-P22  Oan-Mir-1421-P23  Oan-Mir-1421-P24  Oan-Mir-1421-P25  Oan-Mir-1421-P26  Oan-Mir-1421-P27  Oan-Mir-1421-P28  Oan-Mir-1421-P29a  Oan-Mir-1421-P29b  Oan-Mir-1421-P30  Oan-Mir-1421-P31a  Oan-Mir-1421-P31b  Oan-Mir-1421-P31c  Oan-Mir-1421-P32  Oan-Mir-1421-P33  Oan-Mir-1421-P34  Oan-Mir-1421-P35  Oan-Mir-1421-P36a  Oan-Mir-1421-P36b  Oan-Mir-1421-P37  Oan-Mir-1421-P38  Oan-Mir-1421-P39  Oan-Mir-1421-P40  Oan-Mir-1421-P41  Oan-Mir-1421-P42  Oan-Mir-1421-P43  Oan-Mir-1421-P44  Oan-Mir-1421-P45  Oan-Mir-1421-P46  Oan-Mir-1421-P48  Oan-Mir-1421-P49  Oan-Mir-1421-P50  Oan-Mir-1421-P51  Oan-Mir-1421-P52a  Oan-Mir-1421-P52b  Oan-Mir-1421-P53  Oan-Mir-1421-P54 
Orthologues
Node of Origin (locus) O. anatinus
Node of Origin (family) O. anatinus
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041749.1: 96822447-96822507 [+]
Clustered miRNAs
(< 50kb from Mir-1421-P47)
Mir-1421-P22 NC_041749.1: 96790662-96790722 [+]
Mir-1421-P23 NC_041749.1: 96791221-96791281 [+]
Mir-1421-P24 NC_041749.1: 96791800-96791860 [+]
Mir-1421-P25 NC_041749.1: 96794548-96794608 [+]
Mir-1421-P27 NC_041749.1: 96795832-96795892 [+]
Mir-1421-P28 NC_041749.1: 96796646-96796706 [+]
Mir-1421-P29a NC_041749.1: 96797344-96797411 [+]
Mir-1421-P30 NC_041749.1: 96798506-96798563 [+]
Mir-1421-P31b NC_041749.1: 96799320-96799380 [+]
Mir-1421-P32 NC_041749.1: 96799874-96799934 [+]
Mir-1421-P33 NC_041749.1: 96800689-96800749 [+]
Mir-1421-P29b NC_041749.1: 96801390-96801450 [+]
Mir-1421-P31a NC_041749.1: 96802450-96802510 [+]
Mir-1421-P34 NC_041749.1: 96803000-96803054 [+]
Mir-1421-P35 NC_041749.1: 96803731-96803791 [+]
Mir-1421-P36b NC_041749.1: 96804289-96804349 [+]
Mir-1421-P37 NC_041749.1: 96805105-96805165 [+]
Mir-1421-P38 NC_041749.1: 96806411-96806471 [+]
Mir-1421-P39 NC_041749.1: 96808270-96808331 [+]
Mir-1419-P7 NC_041749.1: 96808674-96808732 [+]
Mir-1421-P40 NC_041749.1: 96810304-96810363 [+]
Mir-1421-P36a NC_041749.1: 96810861-96810921 [+]
Mir-1421-P41 NC_041749.1: 96811675-96811735 [+]
Mir-1421-P42 NC_041749.1: 96812547-96812607 [+]
Mir-1421-P43 NC_041749.1: 96816733-96816787 [+]
Mir-1421-P31c NC_041749.1: 96816957-96817017 [+]
Mir-1421-P44 NC_041749.1: 96819518-96819575 [+]
Mir-1421-P45 NC_041749.1: 96820252-96820312 [+]
Mir-1419-P8 NC_041749.1: 96820654-96820712 [+]
Mir-1421-P46 NC_041749.1: 96821372-96821432 [+]
Mir-1421-P47 NC_041749.1: 96822447-96822507 [+]
Mir-1421-P48 NC_041749.1: 96822927-96822987 [+]
Mir-1421-P49 NC_041749.1: 96823569-96823625 [+]
Mir-1419-P9 NC_041749.1: 96823966-96824024 [+]
Mir-1421-P50 NC_041749.1: 96824715-96824775 [+]
Mir-1421-P51 NC_041749.1: 96826285-96826341 [+]
Mir-1421-P52a NC_041749.1: 96833979-96834039 [+]
Mir-1421-P1 NC_041749.1: 96837949-96838010 [+]
Mir-1421-P2 NC_041749.1: 96840218-96840278 [+]
Mir-1419-P1 NC_041749.1: 96841505-96841558 [+]
Mir-1421-P4 NC_041749.1: 96842948-96843008 [+]
Mir-1421-P5 NC_041749.1: 96844194-96844254 [+]
Mir-1421-P6 NC_041749.1: 96844751-96844811 [+]
Mir-1421-P8 NC_041749.1: 96847806-96847866 [+]
Mir-1421-P9 NC_041749.1: 96850234-96850294 [+]
Mir-1419-P2c NC_041749.1: 96853761-96853819 [+]
Mir-1421-P7b NC_041749.1: 96855059-96855119 [+]
Mir-1421-P10 NC_041749.1: 96855616-96855676 [+]
Mir-1421-P12 NC_041749.1: 96857179-96857236 [+]
Mir-1421-P13a NC_041749.1: 96860142-96860202 [+]
Mir-1419-P3 NC_041749.1: 96860539-96860600 [+]
Mir-1419-P2b NC_041749.1: 96861885-96861943 [+]
Mir-1421-P7c NC_041749.1: 96863179-96863242 [+]
Mir-1421-P15 NC_041749.1: 96863738-96863798 [+]
Mir-1421-P13b NC_041749.1: 96864853-96864913 [+]
Mir-1421-P16 NC_041749.1: 96866978-96867038 [+]
Mir-1419-P2a NC_041749.1: 96867655-96867713 [+]
Mir-1421-P17 NC_041749.1: 96868684-96868744 [+]
Mir-1419-P4 NC_041749.1: 96871320-96871378 [+]
Precursor
(pre-Mir +30nt flank)
CCGACCCCUGGUCCCGUGUGGCACGGUGUGGAGAGGUCACGUCUCAUGCCGUGUGACGGUUUAAUAUGCUGCGUGGAGCAUGAUCUCCCUACACAGUGCCGCGUCUGUCCGGCCGGAGAUA
Get precursor sequence
Structure
        10          20        30        40        50          
CCGACCCCUGGUCCCGU--|      G      A       C  CU     C  GUGACGG 
                   GUGGCAC GUGUGG GAGGUCA GU  CAUGC GU       \
                   CGCCGUG CACAUC CUCUAGU CG  GUGCG CG       U
AUAGAGGCCGGCCUGUCUG^      A      C       A  AG     U  UAUAAUU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Oan-Mir-1421-P47_5p*

mirBase accessionMIMAT0006971
Sequence
0- GAGAGGUCACGUCUCAUGCCGU -22
Get sequence
Mature sequence

Oan-Mir-1421-P47_3p

mirBase accessionMIMAT0006972
Sequence
39- UGCGUGGAGCAUGAUCUCCCUA -61
Get sequence