MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-1397

Family name MIR-1397 (all species)
Seed GCAUUGC
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-1397
Paralogues
Orthologues Aca-Mir-1397  Ami-Mir-1397  Cpi-Mir-1397  Gga-Mir-1397  Gja-Mir-1397  Pbv-Mir-1397  Sha-Mir-1397  Spt-Mir-1397  Tgu-Mir-1397 
Node of Origin (locus) Amniota
Node of Origin (family) Amniota
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041742.1: 18645071-18645128 [-]
Clustered miRNAs
(< 50kb from Mir-1397)
Mir-1397 NC_041742.1: 18645071-18645128 [-]
Mir-1398 NC_041742.1: 18645998-18646053 [-]
Precursor
(pre-Mir +30nt flank)
UAAGUCCCUGACACACUGCGAUGUGUGCAUUGCAUUGCGACGGGUUACAUCACUGGACGUAGCAUGAUGUAACCCAACGCAGCAUGAUGUAAGCGUCGUCAUACUUUGGAGAUUUAAA
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Structure
        10          20        30        40        50        
UAAGUCCCUGACACACU--|      G       CA     AC           CUGGA 
                   GCGAUGU UGCAUUG  UUGCG  GGGUUACAUCA     C
                   UGCUGCG AUGUAGU  GACGC  CCCAAUGUAGU     G
AAAUUUAGAGGUUUCAUAC^      A       AC     AA           ACGAU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-1397_5p

mirBase accessionMIMAT0007199
Sequence
0- UGCAUUGCGACGGGUUACAUCA -22
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Star sequence

Oan-Mir-1397_3p*

mirBase accessionMIMAT0007200
Sequence
36- AUGUAACCCAACGCAGCAUGAU -58
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