MirGeneDB ID | Oan-Let-7-P2a4 |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Platypus (Ornithorhynchus anatinus) |
MiRBase ID |
oan-let-7e
|
Paralogues |
Oan-Let-7-P1b
Oan-Let-7-P1c
Oan-Let-7-P1d
Oan-Let-7-P2a1
Oan-Let-7-P2a2
Oan-Let-7-P2a3
Oan-Let-7-P2b1
Oan-Let-7-P2b2
Oan-Let-7-P2b3
Oan-Let-7-P2b4
Oan-Let-7-P2c1
Oan-Let-7-P2c2
Oan-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2a4
Ami-Let-7-P2a4
Bge-Let-7
Bpl-Let-7
Cgi-Let-7
Cli-Let-7-P2a4
Cmi-Let-7-P2a4
Cpi-Let-7-P2a4
Cte-Let-7
Dan-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dpu-Let-7
Dre-Let-7-P2a4a
Dre-Let-7-P2a4b
Dsi-Let-7
Dya-Let-7
Esc-Let-7
Gga-Let-7-P2a4
Gja-Let-7-P2a4
Gmo-Let-7-P2a4a
Gmo-Let-7-P2a4b
Hme-Let-7
Isc-Let-7
Lan-Let-7
Lch-Let-7-P2a4
Lgi-Let-7
Loc-Let-7-P2a4
Mal-Let-7-P2a4a
Mal-Let-7-P2a4b
Mun-Let-7-P2a4
Npo-Let-7
Obi-Let-7
Ovu-Let-7
Pbv-Let-7-P2a4
Pfl-Let-7
Pmi-Let-7
Sko-Let-7
Spt-Let-7-P2a4
Spu-Let-7
Tca-Let-7
Tgu-Let-7-P2a4
Tni-Let-7-P2a4a
Tni-Let-7-P2a4b
Xbo-Let-7
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (mOrnAna1.p.v1_plustraces) |
NC_041734.1: 69085988-69086058 [+]
|
Precursor (pre-Mir +30nt flank) |
CGGCUCCCACCACAGUCCUGUCCUUGAGGCUGAGGUAGUAGAUUGAAUAGUUGUGGGGUCACGGCCUCCCUGUGUGCUAACUAUACAAUCUACUGUCUUUCCUGAGGCGACAGUCAGUUCGCCCUUUCCGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGGCUCCCACCACAGUC- -| G CU GU A GUGGGGUCACGG
CUGUC CUU AGG GAG AGUAGAUUG AUAGUU C
GACAG GGA UCC UUC UCAUCUAAC UAUCAA C
GGCCUUUCCCGCUUGACU C^ G U- UG A UCGUGUGUCCCU
. 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Oan-Let-7-P2a4_5p |
mirBase accession | MIMAT0006984 |
Sequence |
0- UGAGGUAGUAGAUUGAAUAGUU -22
Get sequence
|
Star sequence |
Oan-Let-7-P2a4_3p* |
mirBase accession | MIMAT0006985 |
Sequence |
50- CUAUACAAUCUACUGUCUUUC -71
Get sequence
|